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Welcome to Slicer4
`
`Open  up  3D  Slicer  
`Open  up  3D  Slicer  
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 59
`
`Medivis Exhibit 1023
`
`467
`
`

`

`Slicer4 Minute Tutorial: Viewing the Scene
`
`  
`
`Open the directory dataset2_Head located in
`C:/3DSlicerData_RSNA2014/3DVisualizationDICOM_Tuesday_Dec3
`Drag and drop the file Head_Scene.mrb into Slicer
`©2012-2014 Surgical Planning Laboratory, ARR Slide 60
`
`Medivis Exhibit 1023
`
`468
`
`

`

`Slicer4 Minute Tutorial: Viewing the Scene
`
`   Click on OK to load the file MRHead_Scene.mrb into Slicer
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 61
`
`Medivis Exhibit 1023
`
`469
`
`

`

`Slicer4 Minute Tutorial: Viewing the Scene
`
`3D Viewer
`
`When the scene is finished
`loading, Slicer displays:
`• a 3D model of the head in
`the 3D Viewer, and
`• anatomical MR slices of
`the brain in the 2D Slice
`Viewers.
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 62
`
`Medivis Exhibit 1023
`
`470
`
`

`

`Slicer4 Minute Tutorial:
`
`functionality
`Exploring Slicer’s
`
`To access the Models
`module click on
`Welcome to Slicer.
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 63
`
`Medivis Exhibit 1023
`
`471
`
`

`

`Slicer4 Minute Tutorial: Switching to the Models Module
`
`  
`
`
`
`Slicer displays the GUI of
`the Models Module
`
`©2012-2014 Surgical Planning Laboratory, ARR Slide 64
`
`Medivis Exhibit 1023
`
`472
`
`

`

`Slicer4 Minute Tutorial: Basic 3D Interaction
`
`Left-click & drag
`
`Position the mouse in
`the 3D Viewer.
`
`Hold down the left
`mouse button and drag
`to rotate the model.
`
`©2012-2014 Surgical Planning Laboratory, ARR Slide 65
`
`Medivis Exhibit 1023
`
`473
`
`

`

`Slicer4 Minute Tutorial: Viewing Slices in the 3D Viewer
`
`Click on the Slice Visibility
`Icon to display the Axial Slice in
`the 3D Viewer
`
`  
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 66
`
`Medivis Exhibit 1023
`
`474
`
`

`

`S  
`licer4 Minute Tutorial: 3D Visualization
`
`Slicer adds a view of
`the Axial slice in the
`3D View.
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 67
`
`Medivis Exhibit 1023
`
`475
`
`

`

`Slicer4 Minute Tutorial: Viewing Slices in the 3D Viewer
`
`Click on the layout menu in the
`toolbar, and select the
`Conventional layout
`
`  
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 68
`
`Medivis Exhibit 1023
`
`476
`
`

`

`Slicer4 Minute Tutorial: 3D Visualization
`
`Select the Skin.vtk
`Change the opacity of the model
`from 1.0 to 0.0.
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 69
`
`Medivis Exhibit 1023
`
`477
`
`

`

`Slicer4 Minute Tutorial: 3D Visualization
`
`The model of the skin becomes
`invisible in the 3D viewer and the
`model of the skull bone and
`eyeballs become visible.
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 70
`
`Medivis Exhibit 1023
`
`478
`
`

`

`Slicer4 Minute Tutorial: 3D Visualization
`
`Click on the Slice Visibility icon
`"
`in the Green Slice Viewer to display
`the Coronal Slice in the 3D Viewer.
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 71
`
`
`Medivis Exhibit 1023
`
`479
`
`

`

`Slicer4 Minute Tutorial: 3D Visualization
`Select the 3D model skull_bone.vtk
`in the Model Hierarchy and turn on
`the Clipping option.
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 72
`
`Medivis Exhibit 1023
`
`480
`
`

`

`Slicer4 Minute Tutorial: 3D Visualization
`
`Browse through the coronal
`slices to expose the 3D model
`of the white matter, and the
`left and right optic nerves.
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 73
`
`Medivis Exhibit 1023
`
`481
`
`

`

`Slicer4 Minute Tutorial: 3D Visualization
`
`Now make the skull invisible
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 74
`
`Medivis Exhibit 1023
`
`482
`
`

`

`Slicer4 Minute Tutorial: 3D Visualization
`
`Scroll the Coronal Slices to
`display the hemispheric white
`matter model in the context of
`the image data in the 3D.
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 75
`
`Medivis Exhibit 1023
`
`483
`
`

`

`Slicer4 Minute Tutorial: 3D Visualization
`
`Select the hemispheric white matter
`model called
`hemispheric_white_matter.vtk
`Turn off its visibility.
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 76
`
`Medivis Exhibit 1023
`
`484
`
`

`

`  
`
`Slicer4 Minute Tutorial: 3D Visualization
`
`Slicer displays the optic nerve,
`optic chiasm and optic tracts
`overlaid on the MR images of
`the brain.
`
`©2012-2014 Surgical Planning Laboratory, ARR Slide 80
`Slide 77
`
`Medivis Exhibit 1023
`
`485
`
`

`

`Slicer4 Minute Tutorial: 3D Visualization: Zoom the view
`
`Windows/Linux users: Position the
`mouse in the 3D Viewer, hold down
`the right mouse button and move
`the mouse down to zoom in.
`Mac users: Position the mouse in
`the 3D Viewer, hold down the apple
`button and the mouse button and
`move the mouse down to zoom in
`(or use two fingers on the touch
`pad).
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 78
`
`Medivis Exhibit 1023
`
`486
`
`

`

`Close the existing scene and all its data
`
`Select File->Close Scene
`This removes any dataset
`previously loaded into slicer.
`
`
`Click on Exit to exit Slicer
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 79
`
`Medivis Exhibit 1023
`
`487
`
`

`

`Overview
`Part I: Introduction to the 3DSlicer software
`
`Part II: 3D Data Loading and visualization of DICOM images
`
`
`- Volume Rendering of thoraco-abdominal CT data
`- Surface Rendering of MR head data
`
`Part III: 3D interactive exploration of the anatomy
`- Exploration of the Segments of the liver
`- Exploration of the Segments of the lung
`
`©2012-2014 Surgical Planning Laboratory, ARR
`
`Slide 80
`
`Medivis Exhibit 1023
`
`488
`
`

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