throbber
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`EXHIBIT B
`EXHIBIT B
`
`
`
`

`

`(12) United States Patent
`YaWorski et al.
`
`(10) Patent No.:
`(45) Date of Patent:
`
`US 8.492.359 B2
`*Jul. 23, 2013
`
`US008492359B2
`
`(54) LIPID FORMULATIONS FOR NUCLEICACID
`DELIVERY
`
`(75) Inventors: Edward Yaworski, Maple Ridge (CA);
`Kieu Lam, Surrey (CA); Lloyd Jeffs,
`Delta (CA); Lorne Palmer, Vancouver
`(CA); Ian MacLachlan, Mission (CA)
`
`(*) Notice:
`
`(73) Assignee: Protiva Biotherapeutics, Inc., Burnaby,
`BC (CA)
`Subject to any disclaimer, the term of this
`patent is extended or adjusted under 35
`U.S.C. 154(b) by 59 days.
`This patent is Subject to a terminal dis-
`claimer
`
`(21) Appl. No.: 13/253,917
`
`(22) Filed:
`
`Oct. 5, 2011
`
`(65)
`
`CA
`CA
`
`3, 1999 Holland et al.
`5,885,613 A
`9/1999 Dwyer et al.
`5,958,901 A
`5,976,567 A 11/1999 Wheeler et al.
`5,981,501 A 11/1999 Wheeler et al.
`6,020,202 A
`2/2000 Jessee
`6,020,526 A
`2/2000 Schwartz et al.
`6,034,135 A
`3/2000 Schwartz et al.
`6,051,429 A
`4/2000 Hawley-Nelson et al.
`6,075,012 A
`6/2000 Gebeyehu et al.
`6,165,501 A 12/2000 Tirosh et al.
`6,172,049 B1
`1/2001 Dwyer et al.
`6,251,939 B1
`6/2001 Schwartz et al.
`6,284,267 B1
`9/2001 Aneja
`6,287,591 B1
`9/2001 Semple et al.
`3. R
`383 E. tal
`- w
`awley-Nelson et al.
`6,534,484 B1
`3/2003 Wheeler et al.
`6,586.410 B1
`7/2003 Wheeler et al.
`6,638,529 B2 10/2003 Schwartz et al.
`6,649,780 B1 11/2003 Eiblet al.
`6,671,393 B2 12/2003 Hays et al.
`6,696,424 B1
`2/2004 Wheeler
`6,815,432 B2 11/2004 Wheeler et al.
`6,858,224 B2
`2/2005 Wheeler et al.
`Continued
`Prior Publication Data
`(
`)
`US 2012/O183581 A1
`Jul 19, 2012
`FOREIGN PATENT DOCUMENTS
`ul. 19,
`2309.727 A1
`4f1999
`Related U.S. Application Dat
`2271582 A1 11, 1999
`U.S.
`O
`pp
`(Continued)
`(63) Continuation of application No. 12/424,367, filed on
`OTHER PUBLICATIONS
`Apr. 15, 2009, now Pat. No. 8,058,069.
`Arpicco, S., et al., “Preparation and Characterization of Novel
`(60) Provisional application No. 61/045.228, filed on Apr.
`Cationic Lipids Developed for Gene Transfection.” Proceed. Int’l
`15, 2008.
`Symp. Control. Rel. Bioact. Mater. (Controlled Release Society,
`(51) Int. Cl.
`Inc.), 1999, vol. 26, pp. 759-760.
`CI2N IS/II
`Arpicco, S., et al., “Synthesis, characterization and transfection activ
`ity of new Saturated and unsaturated cationic lipids.” IL Farmaco,
`(52) U.S. Cl.
`2004, vol. 59, pp. 869-878.
`USPC ........................................................ 514/44. A Ballas, N., et al., "Liposomes bearing a quaternary ammonium deter
`(58) Field of Classification Search
`gent as an efficient vehicle for functional transfer of TMV-RNA into
`USPC ........................................................ 514/44. A plant protoplasts.” Biochimica et Biophysica Acta, 1988, vol. 939,
`See application file for complete search history.
`pp. 8-18.
`Barinaga, M., “Step Taken Toward Improved Vectors for Gene Trans
`fer.” Science, 1994, vol. 266, p. 1326.
`Bass, “The Short Answer,” Nature, 2001, 411: 428-9.
`Beale, G. et al., “Gene Silencing Nucleic Acids Designed by Scan
`ning Arrays: Anti-EGFR Activity of siRNA, Ribozyme and DNA
`Enzymes Targeting a Single Hybridization-accessible Region using
`the Same Delivery System.” Journal of Drug Targeting, 2003, vol. 11,
`No. 7
`449-456
`. f. pp.
`
`(2006.01)
`
`(56)
`
`References Cited
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 2 of 74
`
`U.S. PATENT DOCUMENTS
`4,394,448
`7/1983 Szoka, Jr. et al.
`4,438,052
`3, 1984 Weder et al.
`4,515,736
`5, 1985 Deamer
`4,598,051
`7, 1986 Papahadjopoulos et al.
`4,897,355
`1/1990 Eppstein et al.
`5,013,556
`5, 1991 Woodle et al.
`5,171,678
`12/1992 Behr et al.
`5,208,036
`5, 1993 Ep?in et al.
`5,225,212
`7, 1993 Martin et al.
`5,264,618
`1 1/1993 Felgner et al.
`5,279,833
`1/1994 Rose
`5,283,185
`2/1994 Epand et al.
`5,320,906
`6/1994 Eley et al.
`8/1994 Gebeyehu et al.
`5,334,761
`E: SE Eppstein et al.
`5,627,159
`5, 1997 Shih et al.
`5,641,662
`6, 1997 Debs et al.
`5,656,743
`8, 1997 Busch et al.
`5,674,908
`10, 1997 Haces et al.
`E.
`2. E. st al.
`5,736,392
`4/1998 Hawley-Nelson et al.
`5,820,873
`10, 1998 Choi et al.
`3, 1999 Schwartz et al.
`5,877,220
`
`(Continued)
`Primary Examiner — Brian Whiteman
`(74) Attorney, Agent, or Firm — Kilpatrick Townsend &
`Stockton LLP
`
`ABSTRACT
`(57)
`The present invention provides novel, stable lipid particles
`comprising one or more active agents or therapeutic agents,
`methods of making the lipid particles, and methods of deliv
`ering and/or administering the lipid particles. More particu
`larly, the present invention provides stable nucleic acid-lipid
`particles (SNALP) comprising a nucleic acid (such as one or
`more interfering RNA), methods of making the SNALP, and
`methods of delivering and/or administering the SNALP.
`21 Claims, 24 Drawing Sheets
`
`

`

`US 8.492.359 B2
`Page 2
`
`U.S. PATENT DOCUMENTS
`1/2007
`Chu et al.
`7,166,745
`B1
`9, 2008
`Wheeler et al.
`7,422,902
`B1
`1/2009
`Chu et al.
`7,479,573
`B2
`10, 2009
`Chu et al.
`7,601,872
`B2
`Gebeyehu et al.
`3, 2010
`7,687,070
`B2
`Heyes et al.
`6, 2010
`7,745,651
`B2
`9, 2010
`MacLachlan et al.
`7,799,565
`B2
`Heyes et al.
`9, 2010
`7,803,397
`B2
`10, 2010
`MacLachlan et al.
`7,807,815
`B2
`11, 2010
`MacLachlan et al.
`7,838,658
`B2
`3, 2011
`MacLachlan et al.
`7,901,708
`B2
`3, 2011
`Chu et al.
`7,915,450
`B2
`T/2011
`MacLachlan et al.
`7,982,027
`B2
`Hawley-Nelson et al.
`11, 2011
`8,058,068
`B2
`11, 2011
`Yaworski et al. ............. 435/458
`8,058,069
`B2
`4, 2012
`Chu et al.
`8, 158,827
`B2
`T/2012
`MacLachlan et al.
`8,227.443
`B2
`Tousignant et al.
`2001/0048940
`12, 2001
`A1
`Hawley-Nelson et al.
`2003, OO69.173
`4, 2003
`A1
`2003/OO77829
`4, 2003
`MacLachlan
`A1
`Fosnaugh et al.
`2003.0143732
`T/2003
`A1
`2004, OO63654
`4, 2004
`Davis et al.
`A1
`2004/O142892
`T/2004
`Finn et al.
`A1
`2004/O253723
`12, 2004
`Tachas et al.
`A1
`2004/O259247
`12, 2004
`Tuschl et al.
`A1
`2005, OO64595
`3, 2005
`MacLachlan et al.
`A1
`2005, 0118253
`6, 2005
`MacLachlan et al.
`A1
`Gebeyehu et al.
`2005/026O757
`11/2005
`A1
`2006, OOO8910
`1, 2006
`MacLachlan et al.
`A1
`Gebeyehu et al.
`2006/O147514
`T/2006
`A1
`2006/02284.06
`10, 2006
`Chiou et al.
`A1
`2007/OO42O31
`2, 2007
`MacLachlan et al.
`A1
`2007/0202598
`8, 2007
`Chu et al.
`A1
`2007/0202600
`8, 2007
`Chu et al.
`A1
`2009.0143583
`6, 2009
`Chu et al.
`A1
`2009,0291131
`11/2009
`MacLachlan et al.
`A1
`2010. O159593
`6, 2010
`Chu et al.
`A1
`Yang et al.
`2012/0136O73
`5, 2012
`A1
`2012fO238747
`9, 2012
`Chu et al.
`A1
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 3 of 74
`
`CA
`CA
`JP
`JP
`JP
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`WO
`
`FOREIGN PATENT DOCUMENTS
`11, 1999
`2330741
`A1
`T 2001
`2397O16
`A1
`5, 1991
`O3-126211
`8, 1993
`05-202085
`3, 1994
`06-080560
`WO91f16024
`10, 1991
`A1
`WO93,05162
`3, 1993
`A1
`WO93/12240
`6, 1993
`A1
`WO93, 12756
`7, 1993
`A2
`WO93/24640
`12/1993
`A2
`WO93,25673
`12/1993
`A1
`WO95/02698
`1, 1995
`A1
`WO95/18863
`7, 1995
`A1
`WO95/35301
`12/1995
`A1
`WO96,02655
`2, 1996
`A1
`WO96,10390
`4f1996
`A1
`WO96,41873
`12/1996
`A1
`WO 98.51285
`11, 1998
`A2
`WOOO?O3683
`1, 2000
`A2
`WOOOf 1582O
`3, 2000
`A1
`WOOOf 62813
`10, 2000
`A2
`WOO1,05374
`1, 2001
`A1
`WOO1,05873
`1, 2001
`A1
`WOO2,34236
`5, 2002
`A2
`WO O2/O87541
`11, 2002
`A1
`WOO3,O97805
`11, 2003
`A2
`WO 2004/065546
`8, 2004
`A2
`WO 2004f1 10499
`12, 2004
`A1
`WO 2005/007 196
`1, 2005
`A2
`WO 2005/026372
`3, 2005
`A1
`WO 2005/0357.64
`4/2005
`A1
`WO 2005/120152
`12/2005
`A2
`WO 2006.002538
`1, 2006
`A1
`WO 2006/053430
`5, 2006
`A1
`WO 2007/056861
`5/2007
`A1
`
`WO WO 2010/048.228 A2
`WO WO 2010/088537 A2
`WO WO 2010/105209 A1
`
`4/2010
`8, 2010
`9, 2010
`
`OTHER PUBLICATIONS
`Behr, J.-P. “Synthetic Gene-Transfer Vectors.” Acc. Chem. Res.,
`1993, vol. 26, pp. 274–278.
`Brigham, K., et al., “Rapid Communication: In vivo Transfection of
`Murine Lungs with a Functioning Prokaryotic Gene Using a Lipo
`some Vehicle.” The American Journal of the Medical Sciences, vol.
`298, No. 4, pp. 278-281, 1989.
`Brummelkamp, et al., “A System for Stable Expression of Short
`Interfering RNAs in Mammalian Cells.” Science, 2002. V. 296. pp.
`550-553.
`Cevic, G., “How Membrane Chain-Melting Phase-Transition Tem
`perature is Affected by the Lipid Chain Asymmetry and Degree of
`Unsaturation: An Effective Chain-Length Model.” Biochemistry,
`1991, vol. 30, pp. 7186-7193.
`Chonnet al., “Recent advances in liposomal drug-delivery systems.”
`Current Opinion in Biotechnology, 1995, vol. 6, pp. 698-708.
`Cortesi, R., et al., “Effect of cationic liposome composition on in
`vitro cytotoxicity and protective effect on carried DNA.” Interna
`tional Journal of Pharmaceutics, 1996, vol. 139, pp. 69-78.
`Crystal, R. “Transfer of Genes to Humans: Early Lessons and
`Obstacles to Success.” Science, 1995, vol. 270, pp. 404-410.
`Culver K. “The First Human Gene Therapy Experiment.” Gene
`Therapy: A Handbook for Physicians, 1994, pp. 33-40.
`Duzgunes, N., “Membrane Fusion.” Subcellular Biochemistry, 1985,
`vol. 11, pp. 195-286.
`Dwarki, V.J., et al., “Cationic Liposome-Mediated RNA Transfec
`tion.” Methods in Enzymology, 1993, vol. 217, pp. 644-654.
`Elbashir, et a... "Duplexes of 21-nucleotide RNAs mediate RNA
`interference in cultured mammalian cells.” Nature, May 2001, pp.
`494-498, vol. 411.
`Enoch, H., et al., “Formation and properties of 1000-A-diameter,
`single-bilayer phospholipid vesicles.” Proc. Natl. Acad. Sci. USA,
`1979, vol. 76, No. 1, pp. 145-149.
`Felgner, J., et al., "Cationic Lipid-Mediated Transfection in Mam
`malian Cells: Lipofection.” J. Tiss. Cult. Meth., 1993, vol. 15, pp.
`63-68.
`Felgner, J., et al., “Enhanced Gene Delivery and Mechanism Studies
`with a Novel Series of Cationic Lipid Formulations.” The Journal of
`Biological Chemistry, 1994, vol. 269, No. 4, pp. 2550-2561.
`Felgner, P. et al., “Lipofection: A highly efficient, lipid-mediated
`DNA-transfection procedure.” Proc. Natl. Acad. Sci. USA, 1987, vol.
`84, pp. 7413-7417.
`Felgner, P.L., et al., "Cationic Liposome Mediated Transfection.”
`Proc. West. Pharmacol. Soc., 1989, vol. 32, pp. 115-121.
`Gao, X., et al., “A Novel Cationic Liposome Reagent for Efficient
`Transfection of Mammalian Cells.” Biochem. Biophys.Res. Comm.,
`1991, vol. 179, No. 1, pp. 280-285.
`Gershon, H., et al., “Mode of Formation and Structural Feature of
`DNA-Cationic Liposome Complexes Used for Transfection.” Bio
`chemistry, 1993, vol. 32, pp. 7143-7151.
`Global Newswire, retrieved from http://globalnewswire.com on Feb.
`27, 2013, Tekmira Sues Alnylam Pharmaceuticals for repeated mis
`use of tradescrets and confidential information, Mar. 16, 2011, pp.
`1-3.
`Guy-Caffey, J., et al., “Novel Polyaminolipids Enhance the Cellular
`Uptake of Oligonucleotides.” The Journal of Biological Chemistry,
`1995, vol. 270, No. 52, pp. 31391-31396.
`Hawley-Nelson, P. et al., "Lipofect AmineTM Reagent: A New,
`Higher Efficiency Polycationic Liposome Transfection Reagent.”
`Focus, 1993, vol. 15, No. 3, pp. 73-80.
`Heyes et al., “Cationic lipid saturation influences intracellular deliv
`ery of encapsulated nucleic acids.” Journal of Controlled Release,
`2005, vol. 107, pp. 276-287.
`Heyes et al., “Synthesis of novel cationic lipids: effect of structural
`modification on the efficiency of genetransfer.” J. Med. Chem., 2002,
`vol. 45, pp. 99-114.
`Hyde, S., et al., “Correction of the ion transport defect in cystic
`fibrosis transgenic mice by genetherapy.” Nature, 1993, vol. 362, pp.
`250-255.
`
`

`

`US 8.492.359 B2
`Page 3
`
`Jiang, L., et al., “Comparison of protein precipitation methods for
`sample preparation prior to proteomic analysis,” Journal of Chroma
`tography A. 2004, vol. 1023, pp. 317-320.
`Juliano, R., et al., “The Effect of Particle Size and Charge on the
`Clearance Rates of Liposomes and Liposome Encapsulated Drugs.”
`Biochem. Biophys.Res. Commun., 1975, vol. 63, No.3, pp. 651-658.
`Keough, K., “Influence of chain unsaturation and chain position on
`thermotropism and intermolecular interactions in membranes.”
`Biochem. Soc. Transactions, 1990, vol. 18, No. 5, pp. 835-837.
`Lawrence et al. “The formation, characterization and stability of
`non-ionic surfactant vesicles.” S.T.P. Pharma Sciences, 1996, vol. 6,
`No. 1, pp. 49-60.
`Lawrence et al., “Synthesis and aggregation properties of dialkyl
`polyoxyethylene glycerol ethers.” Chemistry and Physics of Lipids,
`1996, 82(2):89-100.
`Legendre, J.-Y. et al., “Delivery of Plasmid DNA into Mammalian
`Cell Lines Using pH-Sensitive Liposomes: Comparison with
`Cationic Liposomes.” Pharm. Res., 1992, vol. 9, No. 10, pp. 1235
`1242.
`Leventis, R., et al., “Interactions of mammalian cells with lipid dis
`persions containing novel metabolizable cationic amphiphiles.”
`Biochem. Biophys. Acta, 1990, vol. 1023, pp. 124-132.
`Liu, et al., "Cationic Liposome-mediated Intravenous Gene Deliv
`ery”. J. Biol. Chem., 1995, V. 270, pp. 24864-24870.
`Marshall, E., “Gene Therapy's Growing Pains.” Science, 1995, vol.
`269, pp. 1050-1055.
`Murahashi et al., “Synthesis and evaluation of neoglycolipid for
`liposome modification.” Biol. Pharm. Bull., 1997, 2006):704-707.
`Orkin, S., et al., NIH Report, Report and Recommendations of the
`Panel to Assess the NIH Investment in Research on Gene Therapy,
`1995.
`Parret al., Factors influencing the retention and chemical stability of
`poly(ethylene glycol)-lipid conjugates incorporated into large
`unilamellar vesicles, Biochimica et Biophysica Acta, 1994, 1195:21
`30.
`Paul, C., et al., “Effective expression of Small interfering RNA in
`human cells.” Nature Biotech., 2002, vol. 20, pp. 505-508.
`Puyal, C., et al., “A new cationic liposome encapsulating genetic
`material: A potential delivery system for polynucleotides.” Eur, J.
`Biochem., 1995, vol. 228, pp. 697-703.
`
`Sawada et al., “Microemulsions in Supercritical CO utilizing the
`polyethyleneglycol dialkylglycerol and their use for the solubiliza
`tion of hydrophiles.” Dyes and Pigments, 2005, pp. 64-74, vol. 65.
`Shin, et al. "Acid-triggered release via dePEGylation of DOPE
`liposomes containing acid-labile vinyl ether PEG-lipids,” Journal of
`Controlled Release, 2003, vol. 91, pp. 187-200.
`Song et al., “Characterization of the inhibitory effect of PEG-lipid
`conjugates on the intracellular delivery of plasmid and antisense
`DNA mediated by cationic lipid liposomes.” Biochimica et
`Biophysica Acta, 2002, 1558:1-13.
`Sorensen, et al., “Gene Silencing by Systemic Delivery of Synthetic
`siRNAs in Adult Mice”. J. Biol. Chem., 2003, V. 327, pp. 761-766.
`Spagnou, S., et al., “Lipidic Carriers of siRNA: Differences in the
`Formulation, Cellular Uptake, and Delivery with Plasmid DNA.”
`Biochemistry, 2004, vol.43, pp. 13348-13356.
`Stamatatos, L., et al., “Interactions of Cationic Lipid Vesicles with
`Negatively Charged Phospholipid Vesicles and Biological Mem
`branes.” Biochemistry, 1988, vol. 27, pp. 3917-3925.
`Szoka, F., et al., “Comparative Properties and Methods of Preparation
`of Lipid Vesicles (Liposomes).” Ann. Rev. Biophys. Bioeng. 1980,
`vol. 9, pp. 467-508.
`Szoka, F., et al., “Procedure for preparation of liposomes with large
`internal aqueous space and high capture by reverse-phase evapora
`tion.” Proc. Natl. Acad. Sci. USA, 1978, vol. 75, No. 9, pp. 4194
`4.198.
`Templeton, “Cationic Liposome-mediated Gene Delivery in vivo”.
`Bioscience Reports, 2002, vol. 22, No. 2, pp. 283-295.
`VanDerWoude, I., et al., “Parameters influencing the introduction of
`plasmid DNA into cells by the use of synthetic amphiphiles as a
`carrier system.” Biochimica et Biophysica Acta, 1995, vol. 1240, pp.
`34-40.
`Wheeler, et al., "Stabilized Plasmid-lipid Particles: Constructions
`and Characterization.” Gene Therapy, V. 6, pp. 271-281, 1999.
`Wilson, R., et al., "Counterion-Induced Condensation of
`Deoxyribonucleic Acid.” A Light-Scattering Study, Biochemistry,
`1979, vol. 18, No. 11, pp. 2192-2196.
`Woodle, M.C., et al., “Versatility in lipid compositions showing
`prolonged circulation with sterically stabilized liposomes.”
`Biochimica et Biophysica Acta, 1992, vol. 1105, pp. 193-200.
`Zhu, N., et al., “Systemic Gene Expression. After Intravenous DNA
`Delivery into Adult Mice.” Science, 1993, vol. 261, pp. 209-211.
`* cited by examiner
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 4 of 74
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 1 of 24
`
`US 8.492.359 B2
`
`
`
`G ?IduueS
`
`k k
`
`+
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 5 of 74
`
`(Seo peleelun
`
`) AqeA
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 2 of 24
`
`US 8.492.359 B2
`
`
`
`
`
`
`
`
`
`
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 6 of 74
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 3 of 24
`
`US 8.492.359 B2
`
`Activity of SNALP Upon intravenous Administration in Mice
`group mean LSD (n=4)
`
`2. 5
`
`2. O
`
`O 5
`
`O.O
`
`w So o A & 9 NS N N.
`)
`-
`e
`& SS S S S S S S S S S S S
`cS ccS c. c.Sc. c. c9; c. c9 cc
`
`l
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 7 of 74
`
`FIG. 2
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 4 of 24
`
`US 8.492.359 B2
`
`3.0
`
`2. 5
`
`2. O
`
`
`
`0. 5
`
`O. O
`
`-47% WS PBS Control
`
`-77% WS PBS Control
`
`PBS
`
`2:30 SNALP 5x1 mg/kg 1:57 SNALP 5x0.1 mg/kg
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 8 of 74
`
`FIG. 3
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 5 of 24
`
`US 8.492.359 B2
`
`Activity of SNALP Upon intravenous Administration in Mice
`group meant SD (n=4)
`
`112 O5O
`
`O 5 O.O al
`
`PBS Group 2 Group 3 Group 4 Group 5 Group 6 Group 7 Group 8
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 9 of 74
`
`FIG. 4
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 6 of 24
`
`US 8.492.359 B2
`
`Activity of SNALP Upon intravenous Administration in Mice
`group meant SD (n=4)
`
`9 2.0
`1.
`CE
`2
`1.
`E 1.5
`
`cC
`(D
`g 1.0
`O
`CC
`5
`2
`O.5
`
`OO
`Nix No
`b
`Q NN N
`Q NS NN N. Nb NP N
`x 8 o 1,
`2
`?
`So
`a& cSoSoses essessssssssssssss
`cc cc cc cccsec.Sc. c9c.Sc.
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 10 of 74
`
`FIG. 5
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 7 of 24
`
`US 8.492.359 B2
`
`140
`
`120
`
`1 OO
`
`Tolerability of IV 1:57 SNALP in Female BALB?c Mice, n
`168
`
`Alanine Aminotransferase
`Aspartate Aminotransferase
`Sorbital Dehydrogenase
`ALT levels indicate hepatocyte damage.
`Incr'd SDH,
`96
`
`4, SD error
`205
`
`
`
`
`
`
`
`
`
`
`
`2.
`
`Tolerability of IV 1:57 SNALP in Female BALB/c Mice,
`4, SD error
`Alanine Aminotransferase
`Aspartate Aminotransferase
`Sorbital Dehydrogenase
`&
`3xULN") is considered clinically
`fold increase (
`2
`significant
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 11 of 74
`
`Lipid dose
`siRNA dose
`
`F.G. 6B
`
`2 2 t
`2 2
`2 2.
`2
`e
`
`ºg ETFT (FEET)
`
`?XXXXXXXXXXX}} co
`Ñ SSSSSSSSSS: SN do
`
`Gear PB
`
`123
`9 mg/kg
`
`102
`
`7181920
`6
`Syringe Citrate
`ear PBS
`99
`
`79
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 8 of 24
`
`US 8.492.359 B2
`
`O E 2.0
`FIG. 7A is
`CC
`Z 15
`Y
`E
`
`10
`
`0.5
`
`O.O
`
`<
`(D
`
`C
`KC
`
`2
`
`SNALP Activity From Different Manufacturing Processes
`IV, 48 h, ApoB-10048 U2/2 G1/2 (Dow),
`female BALB/C mice, n=4, SD error
`
`a.
`
`1:57
`1:57
`1:57
`PBS 157
`Syringe Gear Syringe Gear
`0.05mg 0.05mg 0.1mg/ 0.1mg/
`/kg
`/kg
`kg
`kg
`
`s
`
`Y
`
`FIG. 7E
`
`O6 SNALP Re-Formulation - Activity Assessment in BALB/C Mice
`48 h time point, n=4, SD error bars
`
`S. O.5
`ch
`8 0.4
`s
`5 E O3
`{ 0.2
`n
`$ 0.1
`2 -0.1
`
`1:57
`1:57
`Syringe Gear Syringe Gear
`Press Pump Press Pump
`0.05 mg/kg
`0.1 mg/kg
`
`FIG. 7C
`
`Efficacy of SNALP. Formulations
`Fresh Terminal Plasma, n=4 female Balb/c mice, SD Error Bars
`
`
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 12 of 74
`
`Press Pump Press Pump
`0.05 mg/kg
`0.1 mg/kg
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 9 of 24
`
`US 8.492.359 B2
`
`Tolerability of 157 SNALP IV in BALB/c Mice, n=4 (Grp1-3 n=3), SD error
`
`6%
`
`
`
`9:1
`
`9:1
`
`6:1
`
`6:1
`
`6:1
`
`6:1
`
`9:1
`
`-2% - - - -
`
`- - - -
`
`- - - - - -
`
`- -
`
`- - - - -
`
`-
`
`- - -
`
`- -
`
`-
`
`- - - - .
`
`.
`
`.
`
`.
`
`PBS g1
`7mg/kg
`. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
`. . . . . . . . .
`A . . . . . . . . . . . . . . . . . . . . . . . .
`-4%
`9:1 PBS
`11 mg/kg
`
`.
`
`.
`
`. - - - kg -
`
`- - /kg -
`
`-
`
`-
`
`- -/kg - - kg
`
`v -kg
`
`kg
`
`kg
`
`. . .
`
`.
`
`. . . . . . . . . . . . . . . . . . .
`
`. . . .
`
`. . . . . . . . . . . . . . .
`
`. . .
`
`-6%
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 13 of 74
`
`FIG. 8
`
`

`

`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 14 of 74
`Page 14
`-3 Filed 09/06/22
`
`U.S. Patent
`
`US 8,492,359 B2
`
`ce<>o>>>>>olUlUCODlmlCUCUCOCOTCOCCDakecDeCOD+©SG©G©FTFA
`
`FIG. 9
`
`
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 11 of 24
`
`US 8.492.359 B2
`
`Tolerability of IV 1:57 Gear PBS In-Line SNALP in Female BALB/c
`Mice, n=4, SD error
`
`Alanine Aminotransferase
`ASpartate Aminotransferase
`Sorbital Dehydrogenase
`Samples taken at 24 h time point except
`for last grp (48 h).
`
`5
`
`1200
`
`1,000
`
`8OO
`
`S
`
`600
`
`400
`
`200
`
`
`
`PBS
`
`6:1
`6:1
`6:1
`6:1
`9:1
`9:1
`SNALP SNALP SNALP SNALP SNALP SNALP SNALP
`9mg/ 11 mg/ 11 mg/ 13mg/ 15mg/ 17mg/ 11 mg/kg
`kg
`kg
`kg
`kg
`kg
`kg
`48h
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 15 of 74
`
`FIG 10A
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 12 of 24
`
`US 8.492.359 B2
`
`
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 16 of 74
`
`euoNJO bul Jeddin po--X
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 13 of 24
`
`US 8.492.359 B2
`
`FIG. 1 1A
`157 Gear PBS In-Line SNALP Activity From Different input Lipid:Drug Ratios
`IV, 48 h, ApoB-10048 U2/2 G1/2 (Dow), female BALB/c mice, n=4, SD error
`
`3.0
`
`2. 5
`
`112 O5.0
`
`O. 5
`
`FIG. 11B
`
`0.40
`
`0.35
`
`0. 3 O
`
`O. 2 5
`
`0. 1 5
`
`2-tailed T-test: p=0.078
`
`SNALP Re-Formulation - Activity Assessment in BALB?c. Mice
`DOW ApoB lead siRNA, 48 h time point, n=4, SD error bars
`LLO =9%
`
`-53%
`1 excluded
`
`OO 12 OO
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 17 of 74
`
`0.05 -
`
`OOO
`
`
`
`kg
`kg
`mg/kg
`1:57 SNALP (10:1)
`
`0.1 mg/l 0.2 mg/l 0.4 mg/
`0.05
`Kg
`kg
`kg
`mg/kg
`New 1:57 SNALP (7:1)
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 14 of 24
`
`CO LO <r çr) (N. ~
`O CD C C C c C
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 18 of 74
`
`LP (7
`:1)
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 15 of 24
`
`US 8.492.359 B2
`
`120%
`
`11.5%
`
`1 10%
`
`10.5%
`
`100%
`
`95%
`
`90%
`8
`
`--Luc - A - PLK1424
`
`12 16 20 24 28 32 36 40 44 48 52 56 60
`Study Day
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 19 of 74
`
`F.G. 13
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 16 of 24
`
`US 8.492.359 B2
`
`- A - Contro SNAP -()- Active SNALP
`
`100%
`
`80%
`
`60%
`
`40%
`
`20%
`
`O%
`15 20 25 30 35 40 45 50 55 6.O 65 7O 75 80 85 90
`Days after seeding
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 20 of 74
`
`FIG. 14
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 17 of 24
`
`US 8.492.359 B2
`
`
`
`CC
`2.
`Y
`S
`?h
`?
`CC
`CD
`--
`Na
`-
`l
`--
`C
`(S
`CD
`s
`
`PBS
`
`LuC
`
`PLK1424
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 21 of 74
`
`FIG. 15
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 18 of 24
`
`US 8.492.359 B2
`
`
`
`-- PLK1424 5'RACE
`product
`476bp
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 22 of 74
`
`FIG. 16
`
`

`

`Patent
`
`Jul. 23, 2013
`
`Sheet 19 of 24
`
`US 8.492.359 B2
`
`
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 23 of 74
`
`FIG. 17
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 20 of 24
`
`US 8.492.359 B2
`
`
`
`6x2mg/kg Mean tumor volume
`
`--Luc-DMA
`-HPLK-DMA
`- A - PLK-DSA
`
`8
`
`10
`
`12
`
`14
`
`16
`Days
`
`18
`
`20
`
`22
`
`24
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 24 of 74
`
`F.G. 18
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 21 of 24
`
`US 8.492.359 B2
`
`PLK mRNA silencing in scid Ibeige mice treated with 2mg/kg 1:57 SNALP against
`subcutaneous Hep3B tumors
`
`100%
`
`-15%
`
`-30%
`
`
`
`-37%
`
`-52%
`
`-65%
`
`0.70
`
`0.60
`
`osol
`
`0.40
`
`0.30
`
`0.20
`
`O. 10
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 25 of 74
`
`FIG. 19
`
`

`

`-0- Luc-OMA
`-H PLK-DMA
`PLK-DSA
`
`--
`
`-
`
`2200
`2000
`1800
`1600
`8
`2 1400
`O
`o 5 1200
`E
`1000
`800
`600
`-:
`400
`200 use
`O 1TA---
`8 10 12 14 16 18 20 22 24 26 28 30 32 34 36 38 40 42 44 46 48 50
`Days
`
`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 22 of 24
`
`US 8.492.359 B2
`
`6x2mg/kg Mean tumor volume
`
`Crossover dosing of Luc
`cDMA group with 6 x 2
`mg/kg PLK cDSA SNALP
`
`Initial 6 x 2 mg/kg
`SNAP
`
`? 4.
`D
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 26 of 74
`
`FIG. 20
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 23 of 24
`
`US 8.492.359 B2
`
`120
`
`1.00
`
`O.80
`
`O.60
`
`O40
`
`0.20
`
`0.00
`
`Mean hPLK (1:4): hdAPDH (1:40) minus "background"
`
`0.99
`
`0.61
`
`O42
`
`0.23
`
`0.23
`
`24h Luc 1:57 24h PLK 1:57 24h PLK 1.57 96h PLK 1:57 96h PLK 1.57
`CDSA
`CDMA
`CDSA
`CDMA
`CDMA
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 27 of 74
`
`FIG 21
`
`

`

`U.S. Patent
`
`Jul. 23, 2013
`
`Sheet 24 of 24
`
`US 8.492.359 B2
`
`
`
`-- 1:57 PEG-CDSA SNAP
`
`-A- 1:57 PEG-CDMA SNAP
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 28 of 74
`
`FIG. 22
`
`

`

`US 8,492,359 B2
`
`1.
`LPID FORMULATIONS FOR NUCLECACD
`DELIVERY
`
`CROSS-REFERENCES TO RELATED
`APPLICATIONS
`
`The present application is a continuation of U.S. applica
`tion Ser. No. 12/424,367 filed Apr. 15, 2009, now U.S. Pat.
`No. 8,058,069, which application claims priority to U.S. Pro
`visional Application No. 61/045,228, filed Apr. 15, 2008, the
`disclosures of which are herein incorporated by reference in
`their entirety for all purposes.
`
`10
`
`STATEMENT REGARDING FEDERALLY
`SPONSORED RESEARCH ORDEVELOPMENT
`
`15
`
`Not applicable.
`
`NAMES OF PARTIES TO AJOINT RESEARCH
`AGREEMENT
`
`Not applicable.
`
`REFERENCE TO A “SEQUENCE LISTING. A
`TABLE, ORACOMPUTER PROGRAM LISTING
`APPENDIX SUBMITTED AS ANASCII TEXT
`FILE
`
`25
`
`The Sequence Listing written in file-77-2.TXT, created on
`Mar. 13, 2012, 8,192 bytes, machine format IBM-PC, MS
`30
`Windows operating system, is hereby incorporated by refer
`ence in its entirety for all purposes.
`
`BACKGROUND OF THE INVENTION
`
`2
`Yei et al., Gene Therapy, 1:192 (1994); Hope et al., Molecular
`Membrane Biology, 15:1 (1998)). Furthermore, viral systems
`are rapidly cleared from the circulation, limiting transfection
`to “first-pass' organs Such as the lungs, liver, and spleen. In
`addition, these systems induce immune responses that com
`promise delivery with Subsequent injections.
`Plasmid DNA-cationic liposome complexes are currently
`the most commonly employed nonviral gene delivery
`vehicles (Felgner, Scientific American, 276:102 (1997);
`Chonn et al., Current Opinion in Biotechnology, 6:698
`(1995)). For instance, cationic liposome complexes made of
`an amphipathic compound, a neutral lipid, and a detergent for
`transfecting insect cells are disclosed in U.S. Pat. No. 6,458,
`382. Cationic liposome complexes are also disclosed in U.S.
`Patent Publication No. 20030073640.
`Cationic liposome complexes are large, poorly defined
`systems that are not Suited for systemic applications and can
`elicit considerable toxic side effects (Harrison et al., Biotech
`niques, 19:816 (1995); Lietal. The Gene, 4:891 (1997); Tam
`et al., Gene Ther..., 7:1867 (2000)). As large, positively
`charged aggregates, lipoplexes are rapidly cleared when
`administered in vivo, with highest expression levels observed
`in first-pass organs, particularly the lungs (Huang et al.,
`Nature Biotechnology, 15:620 (1997); Templeton et al.,
`Nature Biotechnology, 15:647 (1997); Hofland et al., Phar
`maceutical Research, 14:742 (1997)).
`Other liposomal delivery systems include, for example, the
`use of reverse micelles, anionic liposomes, and polymer lipo
`somes. Reverse micelles are disclosed in U.S. Pat. No. 6,429,
`200. Anionic liposomes are disclosed in U.S. Patent Publica
`tion No. 20030026831. Polymer liposomes that incorporate
`dextrinor glycerol-phosphocholine polymers are disclosed in
`U.S.
`Patent
`Publication
`Nos. 20020081736 and
`20030082103, respectively.
`A gene delivery system containing an encapsulated nucleic
`acid for systemic delivery should be small (i.e., less than
`about 100 nm diameter) and should remain intact in the cir
`culation for an extended period of time in order to achieve
`delivery to affected tissues. This requires a highly stable,
`serum-resistant nucleic acid-containing particle that does not
`interact with cells and other components of the vascular com
`partment. The particle should also readily interact with target
`cells at a disease site in order to facilitate intracellular delivery
`of a desired nucleic acid.
`Recent work has shown that nucleic acids can be encapsu
`lated in small (e.g., about 70 nm diameter) “stabilized plas
`mid-lipid particles' (SPLP) that consist of a single plasmid
`encapsulated within a bilayer lipid vesicle (Wheeler et al.,
`Gene Therapy, 6:271 (1999)). These SPLPs typically contain
`the “fusogenic' lipid dioleoylphosphatidylethanolamine
`(DOPE), low levels of cationic lipid, and are stabilized in
`aqueous media by the presence of a poly(ethylene glycol)
`(PEG) coating. SPLPs have systemic application as they
`exhibit extended circulation lifetimes following intravenous
`(i.v.) injection, accumulate preferentially at distal tumor sites
`due to the enhanced vascular permeability in Such regions,
`and can mediate transgene expression at these tumor sites.
`The levels of transgene expression observed at the tumor site
`following i.v. injection of SPLPs containing the luciferase
`marker gene are Superior to the levels that can be achieved
`employing plasmid DNA-cationic liposome complexes (li
`poplexes) or naked DNA.
`Thus, there remains a strong need in the art for novel and
`more efficient methods and compositions for introducing
`nucleic acids such as siRNA into cells. In addition, there is a
`need in the art for methods of downregulating the expression
`of genes of interest to treat or prevent diseases and disorders
`
`RNA interference (RNAi) is an evolutionarily conserved
`process in which recognition of double-stranded RNA
`(dsRNA) ultimately leads to posttranscriptional Suppression
`of gene expression. This Suppression is mediated by short
`dsRNA, also called small interfering RNA (siRNA), which
`induces specific degradation of mRNA through complemen
`tary base pairing. In several model systems, this natural
`response has been developed into a powerful tool for the
`investigation of gene function (see, e.g., Elbashiret al., Genes
`Dev., 15:188-200 (2001); Hammond et al., Nat. Rev. Genet.,
`2:110-119 (2001)). More recently, it was discovered that
`introducing synthetic 21-nucleotide dsRNA duplexes into
`mammalian cells could efficiently silence gene expression.
`Although the precise mechanism is still unclear, RNAi
`provides a potential new approach to downregulate or silence
`the transcription and translation of a gene of interest. For
`example, it is desirable to modulate (e.g., reduce) the expres
`sion of certain genes for the treatment of neoplastic disorders
`Such as cancer. It is also desirable to silence the expression of
`genes associated with liver diseases and disorders such as
`hepatitis. It is further desirable to reduce the expression of
`certain genes for the treatment of atherosclerosis and its
`manifestations, e.g., hypercholesterolemia, myocardial inf
`arction, and thrombosis.
`A safe and effective nucleic acid delivery system is
`required for RNAi to be therapeutically useful. Viral vectors
`are relatively efficient gene delivery systems, but suffer from
`a variety of limitations, such as the potential for reversion to
`the wild-type as well as immune response concerns. As a
`result, nonviral gene delivery systems are receiving increas
`ing attention (Worgall et al., Human Gene Therapy, 8:37
`(1997); Peeters et al., Human Gene Therapy, 7:1693 (1996):
`
`35
`
`40
`
`45
`
`50
`
`55
`
`60
`
`65
`
`Case 1:22-cv-02229-MKV Document 42-3 Filed 09/06/22 Page 29 of 74
`
`

`

`US 8,492,359 B2
`
`3
`Such as cancer and atherosclerosis. The present invention
`addresses these and other needs.
`
`BRIEF SUMMARY OF THE INVENTION
`
`10
`
`15
`
`25
`
`30
`
`35
`
`40
`
`50
`
`55
`
`The present invention provides novel, serum-stable lipid
`particles comprising one or more active agents or therapeutic
`agents, methods of making the lipid particles, and methods of
`delivering and/or administering the lipid particles (e.g., for
`the treatment of a disease or disorder).
`In preferred embodiments, the act

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