throbber
Subject
`ID
`
`Cohort
`
`Tumor Type
`
`MSI Status
`
`Germline mutations in MMR
`genes
`
`Documented Lynch
`Syndrome
`
`IHC
`
`WHO/RECIST
`Response Rate
`
`Radiographic Response
`(% change from baseline SLD)
`
`Biochemical Response
`(% tumor marker change)
`
`1
`3
`4
`6
`7
`8
`9
`
`A
`B
`C
`C
`B
`A
`A
`
`Colorectal
`
`Colorectal
`
`Ampulla of Vater
`
`Small Bowel
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`MSI
`MSS
`MSI
`MSI
`MSS
`MSI
`MSI
`
`MSH-2 (splice)
`None
`MSH-2 (stop)
`MSH-2 (stop)
`None
`None
`None
`
`Yes
`
`No
`
`Yes
`
`Yes
`
`No
`
`No
`
`Yes
`
`No
`
`Unknown
`
`Unknown
`
`MSH-2, MSH-6
`
`MSH-2, MSH-6
`
`Unknown
`
`hMLH-1
`
`Unknown
`
`None
`
`SD
`
`PD
`
`PD
`
`PD
`
`PD
`
`PR
`
`SD
`
`SD
`
`-4
`
`55
`
`56
`
`38
`
`35
`
`-50
`
`2
`
`6
`
`-79
`
`586
`
`336
`
`No Marker
`
`55
`
`-99
`
`-17
`
`74
`
`10
`
`B
`
`MSS
`
`None
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colon/Duodenal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Ampulla of Vater
`
`Colorectal
`
`Yes
`
`No
`
`No
`
`Yes
`
`Yes
`
`No
`
`No
`
`No
`
`Yes
`
`No
`
`Unknown
`
`Unknown
`
`Unknown
`
`MSH-2, MSH-6
`
`Unknown
`
`Unknown
`None
`hMLH-1, PMS2
`
`MSH2,MSH6
`
`Unknown
`
`SD
`
`PD
`
`PD
`
`PR
`
`SD
`
`PD
`
`PD
`
`PR
`
`PR
`
`PD
`
`-7
`
`45
`
`16
`
`-35
`
`-28
`
`40
`
`5
`
`-35
`
`-73
`
`34
`
`-94
`
`1939
`
`478
`
`-97
`
`-94
`
`65
`
`-7
`
`-75
`
`-96
`
`60
`
`Colorectal
`
`Colorectal
`
`Duodenum
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Endometrium
`
`Endometrium
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`No
`
`No
`
`No
`
`No
`
`No
`
`No
`
`No
`
`No
`
`Yes
`
`No
`
`Yes
`
`Unknown
`None
`PMS2, MLH1
`
`Unknown
`
`Unknown
`None
`MHL-1, PMS 2
`
`MSH-2, MSH-6
`
`MSH-2 , MSH-6, weak MLH 1
`
`Unknown
`
`MSH-2, MSH-6
`
`SD
`
`Clinical PD
`
`PR
`
`Clinical PD
`
`Clinical PD
`
`PD
`
`CR
`
`PR
`
`PR
`
`PD
`
`PD
`
`-14
`
`2
`
`-50
`
`-11
`
`-14
`
`-61
`
`-70
`
`-51
`
`16
`
`7
`
`-12
`
`No Marker
`
`No Marker
`
`-4
`
`11
`
`-9
`
`-93
`
`-13
`
`No Marker
`
`No Marker
`
`28
`
`-93
`
`MSI
`A
`11
`MSS
`B
`13
`MSS
`B
`14
`MSI
`A
`15
`MSI
`A
`16
`MSS
`B
`17
`MSS
`B
`18
`MSI
`A
`19
`MSI
`C
`20
`MSS
`B
`21
`MSS
`B
`22
`MSS
`B
`24
`MSI
`C
`25
`MSS
`B
`26
`MSS
`B
`27
`MSS
`B
`28
`MSI
`C
`29
`MSI
`C
`30
`MSI
`A
`31
`MSS
`B
`32
`MSI
`A
`33
`MSI
`C
`35
`MSI
`A
`36
`MSS
`B
`37
`MSS
`B
`38
`MSS
`B
`40
`MSS
`B
`41
`MSI
`A
`42
`MSI
`C
`44
`MSS
`B
`2.001
`MSS
`B
`2.002
`MSS
`B
`2.003
`MSI
`C
`2.004
`Gastric
`1Only HLA A and B were used for neoantigen predicition
`2 5% or greater indicates significant PD-L1 expression on tumor cells
`
`Bile duct
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Ampulla of Vater
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`MSH-2 (FS)
`None
`None
`None
`MLH-1 (FS)
`None
`None
`None
`MSH2
`None
`None
`None
`None
`None
`None
`None
`None
`None
`MLH-1
`None
`MSH-2
`None
`MLH-1
`None
`None
`None
`None
`Pending
`Pending
`None
`None
`None
`Pending
`
`No
`
`Yes
`
`No
`
`No
`
`No
`
`No
`
`Yes
`
`Yes
`
`No
`
`No
`
`No
`
`Unknown
`
`MLH1;PMS2
`
`MLH1
`
`Unknown
`
`Unknown
`
`Unknown
`
`Unknown
`
`Unknown
`
`MSH-6
`None
`None
`None
`MLH1, PMS2
`
`PR
`
`SD
`
`PD
`
`Clinical PD
`
`Not evaluable
`
`Clinical PD
`
`Not evaluable
`
`Not evaluable
`
`PD
`
`Not evaluable
`
`Not evaluable
`
`Not evaluable
`
`-41
`
`3
`
`26
`
`2
`
`-4
`
`-64
`
`-20
`
`17
`
`-37
`
`No Marker
`
`-95
`
`No Marker
`
`306
`
`209
`
`46
`
`No Marker
`
`

`

`Subject
`ID
`
`1
`3
`4
`6
`7
`8
`9
`
`10
`
`Cohort
`
`Tumor Type
`
`Patient HLA Haplotypes
`
`HLA Haplotypes
`analyzed by for
`neoantigen prediction1
`
`Total
`Somatic
`mutations
`
`Mutations Resulting
`in an Amino Acid
`Change
`
`Total Neoantigens
`
`Total
`neoantigens per
`allele
`
`A*29:02, A*74:01, B*18:01, B*50:01, C*06:02, C*07:04
`A*33:01, B*07:05, B*15:03, C*02:10, C*07:02
`A*02:01, A*26:01, B*35:01, B*38:01, C*04:01, C*12:03
`A*02:01, B*07:02, B*15:01, C*03:04, C*07:02
`A*11:01, A*24:02, B*07:02, C*07:02
`A*11:01, A*33:01, B*14:02, C*08:02
`A*02:01, A*31:01, B*07:02, B*51:01, C*07:02, C*15:02
`
`A*23:01,A*26:01,B*38:01,B*44:03,C*04:01,C*12:03
`
`A
`B
`C
`C
`B
`A
`A
`
`B
`
`Colorectal
`
`Colorectal
`
`Ampulla of Vater
`
`Small Bowel
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colon/Duodenal
`
`Colorectal
`
`2 out of 4
`
`4 out of 4
`3 out of 3
`3 out of 3
`3 out of 3
`4 out of 4
`
`4 out of 4
`
`4 out of 4
`4 out of 4
`
`4 out of 4
`4 out of 4
`3 out of 4
`
`1291
`Failed
`771
`2138
`67
`1681
`1814
`
`118
`
`777
`-
`505
`1575
`59
`1016
`1222
`
`105
`
`349
`-
`571
`2494
`52
`1200
`2326
`
`68
`
`175
`
`143
`831
`17
`400
`582
`
`17
`
`133
`3
`
`877
`982
`23
`
`Mutation-
`associated
`Neoantigens
`(MANAs)
`120
`-
`233
`791
`17
`322
`626
`
`22
`
`MANA per
`allele
`
`Membranous PD-L1
`Expression on tumor cells
`(%)2
`
`0
`0
`5
`0
`Failed
`0
`0
`
`0
`
`60
`
`58
`264
`6
`107
`157
`
`6
`
`54
`1
`
`257
`305
`7
`
`A
`11
`B
`13
`B
`14
`A
`15
`A
`16
`B
`17
`B
`18
`A
`19
`C
`20
`B
`21
`B
`22
`B
`24
`C
`25
`B
`26
`B
`27
`B
`28
`C
`29
`C
`30
`A
`31
`B
`32
`A
`33
`C
`35
`A
`36
`B
`37
`B
`38
`B
`40
`B
`41
`A
`42
`C
`44
`B
`2.001
`B
`2.002
`B
`2.003
`C
`2.004
`Gastric
`1Only HLA A and B were used for neoantigen predicition
`2 5% or greater indicates significant PD-L1 expression on tumor cells
`
`A*02:01,A*03:01,B*15:01,B*44:02,C*03:04,C*04:01
`A*02:01, A*24:02, B*27:02, B*51:01, C*02:02
`A*01:01, A*68:02, B*14:02, B*37:01, C*07:01, C*08:02
`A*02:03, A*11:01, B*15:01, B*18:01, C*04:01, C*07:04
`A*03:01, A*11:01, B*15:18, B*35:01, C*04:01, C*07:04
`A*01:01, A*30:01, B*08:01, B*13:02, C*06:02, C*07:01
`A*02:01, A*68:01, B*44:02, , C*05:01
`A*01:01, A*31:01, B*08:01, B*35:01, C*04:01, C*07:01
`Not Done
`A*01:01, A*02:01, B*51:01, B*55:01, C*03:03, C*14:02
`A*23:01, A*68:01, B*35:01, B*40:01, C*03:04, C*04:01
`Not Done
`A*03:01, A*25:01, B*07:02, B*18:01, C*07:02, C*12:03
`A*11:01, A*24:02, B*18:01, B*57:01, C*06:02, C*07:02
`A*01:02, A*24:02, B*07:02, B*58:02, C*06:02, C*07:02
`A*03:01, B*07:02, B*14:02, C*07:02, C*08:02
`A*01:01, A*03:01, B*07:02, B*37:01, C*06:02, C*07:02
`A*24:02, A*26:01, B*35:02, C*04:01
`A*11:01, A*24:02, B*35:02, B*52:01, C*04:01, C*12:02
`A*01:01, A*02:01, B*44:02, B*57:01, C*05:01, C*06:02
`A*02:01, A*26:01, B*13:02, B*27:05, C*02:02, C*06:02
`Not Done
`A*02:01, A*29:02, B*44:02, B*44:03, C*02:02, C*16:01
`Not Done
`A*01:01, A*02:01, B*08:01, B*44:02, C*05:01, C*07:01
`A*01:01, A*26:01, B*07:02, B*44:02, C*05:01, C*07:02
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`
`533
`10
`-
`3506
`3928
`69
`-
`1011
`
`59
`160
`
`-
`-
`-
`-
`-
`-
`-
`-
`-
`
`-
`
`-
`-
`
`253
`
`20
`40
`
`164
`
`7
`11
`
`214
`2
`-
`1029
`1221
`22
`-
`654
`
`20
`45
`
`-
`-
`-
`-
`-
`-
`-
`-
`-
`
`-
`
`-
`-
`
`0
`Failed
`Failed
`10
`10
`0
`0
`10
`
`0
`Failed
`
`0
`0
`1
`0
`1
`0
`0
`0
`0
`
`0
`
`0
`0
`
`4 out of 4
`
`3 out of 4
`3 out of 4
`
`
`
`328
`5
`-
`1476
`2287
`65
`-
`770
`
`72
`96
`
`-
`-
`-
`-
`-
`-
`-
`-
`-
`
`-
`
`-
`-
`
`492
`5
`Failed
`2345
`4025
`70
`Failed
`1477
`Not Done
`77
`102
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`Not Done
`
`Colorectal
`
`Colorectal
`
`Ampulla of Vater
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Duodenum
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Endometrium
`
`Endometrium
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Bile duct
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Ampulla of Vater
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`

`

`Subject
`ID
`
`Cohort
`
`Tumor Type
`
`PD-L1 Expression on TILs and
`Macrophages invasive front
`(%)
`
`PD-L1
`Expression
`on TILS (%)
`
`CD8 density
`in tumor
`(mm2)
`
`CD8 density at
`Invasive front
`(mm2)
`
`CD8 density in
`non-tumor tissue
`(mm2)
`
`Reason Off Study
`
`1
`3
`4
`6
`7
`8
`9
`
`10
`
`A
`B
`C
`C
`B
`A
`A
`
`B
`
`Colorectal
`
`Colorectal
`
`Ampulla of Vater
`
`Small Bowel
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`40
`0
`5
`0
`Failed
`0
`75
`
`20
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colon/Duodenal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Ampulla of Vater
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Duodenum
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Endometrium
`
`Endometrium
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Bile duct
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`Ampulla of Vater
`
`Colorectal
`
`Colorectal
`
`Colorectal
`
`0
`Failed
`Failed
`15
`75
`5
`5
`40
`
`1
`Failed
`
`Failed
`0
`0
`0
`Failed
`70
`0
`10
`0
`
`5
`
`0
`5
`
`10
`0
`5
`0
`Failed
`0
`25
`
`20
`
`0
`Failed
`Failed
`20
`5
`10
`5
`10
`
`0
`Failed
`
`10
`0
`0
`0
`5
`30
`0
`5
`5
`
`5
`
`0
`10
`
`227
`23
`16
`Failed
`Failed
`5
`91
`
`335
`
`32
`0
`Failed
`162
`298
`Failed
`144
`1009
`
`38
`Failed
`
`623
`Failed
`71
`114
`870
`347
`7
`72
`32
`
`205
`
`127
`50
`
`363
`73
`209
`Failed
`Failed
`64
`407
`
`227
`
`282
`77
`Failed
`72
`673
`Failed
`343
`582
`
`308
`Failed
`
`Failed
`Failed
`194
`259
`Failed
`1215
`13
`146
`891
`
`1192
`
`463
`27
`
`0
`0
`0
`Failed
`Failed
`0
`0
`
`0
`
`0
`0
`Failed
`0
`0
`Failed
`0
`Failed
`
`0
`Failed
`
`Failed
`Failed
`0
`0
`Failed
`0
`Failed
`0
`0
`
`0
`
`0
`0
`
`Trousseau's Syndrome (unrelated)
`Disease Progression
`Disease Progression
`Disease Progression
`Disease Progression
`N/A
`Disease Progression
`Asymptomatic grade 2 pancreatitis
`(grade 3 amylase/lipase) (related)
`N/A
`Disease Progression
`Disease Progression
`N/A
`N/A
`Disease Progression
`Disease Progression
`N/A
`N/A
`Disease Progression
`Disease Progression
`Disease Progression
`N/A
`Disease Progression
`Disease Progression
`N/A
`N/A
`N/A
`N/A
`Disease Progression
`N/A
`N/A
`N/A
`Disease Progression
`Disease Progression
`N/A
`Disease Progression
`N/A
`Disease Progression
`Disease Progression
`N/A
`N/A
`N/A
`
`A
`11
`B
`13
`B
`14
`A
`15
`A
`16
`B
`17
`B
`18
`A
`19
`C
`20
`B
`21
`B
`22
`B
`24
`C
`25
`B
`26
`B
`27
`B
`28
`C
`29
`C
`30
`A
`31
`B
`32
`A
`33
`C
`35
`A
`36
`B
`37
`B
`38
`B
`40
`B
`41
`A
`42
`C
`44
`B
`2.001
`B
`2.002
`B
`2.003
`C
`2.004
`Gastric
`1Only HLA A and B were used for neoantigen predicition
`2 5% or greater indicates significant PD-L1 expression on tumor cells
`
`

This document is available on Docket Alarm but you must sign up to view it.


Or .

Accessing this document will incur an additional charge of $.

After purchase, you can access this document again without charge.

Accept $ Charge
throbber

Still Working On It

This document is taking longer than usual to download. This can happen if we need to contact the court directly to obtain the document and their servers are running slowly.

Give it another minute or two to complete, and then try the refresh button.

throbber

A few More Minutes ... Still Working

It can take up to 5 minutes for us to download a document if the court servers are running slowly.

Thank you for your continued patience.

This document could not be displayed.

We could not find this document within its docket. Please go back to the docket page and check the link. If that does not work, go back to the docket and refresh it to pull the newest information.

Your account does not support viewing this document.

You need a Paid Account to view this document. Click here to change your account type.

Your account does not support viewing this document.

Set your membership status to view this document.

With a Docket Alarm membership, you'll get a whole lot more, including:

  • Up-to-date information for this case.
  • Email alerts whenever there is an update.
  • Full text search for other cases.
  • Get email alerts whenever a new case matches your search.

Become a Member

One Moment Please

The filing “” is large (MB) and is being downloaded.

Please refresh this page in a few minutes to see if the filing has been downloaded. The filing will also be emailed to you when the download completes.

Your document is on its way!

If you do not receive the document in five minutes, contact support at support@docketalarm.com.

Sealed Document

We are unable to display this document, it may be under a court ordered seal.

If you have proper credentials to access the file, you may proceed directly to the court's system using your government issued username and password.


Access Government Site

We are redirecting you
to a mobile optimized page.





Document Unreadable or Corrupt

Refresh this Document
Go to the Docket

We are unable to display this document.

Refresh this Document
Go to the Docket