throbber
Tue Journat or BioLocicaL CHEMISTRY
`© 1994 by The American Society for Biochemistry and MolecularBiology, Inc.
`
`Vol. 269, No. 10, Issue of March 11, pp. 7185-7191, 1994
`Printed in U.S.A.
`
`Interactions of Synthetic Peptide Analogs of the Class A
`Amphipathic Helix with Lipids
`EVIDENCE FOR THE SNORKEL HYPOTHESIS*
`
`(Received for publication, October 12, 1993, and in revised form, December6, 1993)
`
`Vinod K. Mishra, Mayakonda N.Palgunachari, Jere P. Segrest, and G. M. Anantharamaiaht
`From the Departments of Medicine and Biochemistry and the Atherosclerosis Research Unit, University of
`Alabama-Birmingham Medical Center, Birmingham, Alabama 35294
`
`Class A amphipathic helixes present in exchangeable
`plasma apolipoproteins are characterized by the loca-
`tion of positively charged amino acid residues at the
`non-polar-polar interface and negatively charged amino
`acid residuesat the center of the polar face. The objec-
`tives of the present study were:(i) to investigate the role
`of hydrocarbonside chain length of the interfacial posi-
`tively charged aminoacid residuesin the lipid affinity
`of class A amphipathic helixes, and (ii) to investigate the
`importance of the nature of interfacial charge in the
`lipid affinity of class A amphipathic helixes. Toward this
`end, lipid interactions of the following two analogs of
`the class A amphipathic helix, Ac-18A-NH, (acetyl-Asp-
`Trp-Leu-Lys-Ala-Phe-Tyr-Asp-Lys-Val-Ala-Glu-Lys-Leu-
`Lys-Glu-Ala-Phe-NH2), and Ac-18A(Lys>Haa)-NH,
`(acetyl-Asp-Trp-Leu-Haa-Ala-Phe-Tyr-Asp-Haa-Val-Ala-
`Glu-Haa-Leu-Haa-Glu-Ala-Phe-NH2) (Haa = homoamino-
`alanine), were studied. The side chain of Haa has two
`CH, groupsless than thatof lysine. The lipid affinities of
`these two peptide analogs were compared with that of
`Ac-18R-NHg, an analog of Ac-18A-NH, with positions of
`the charged amino acid residues reversed. The tech-
`niques used in these studies were circular dichroism,
`fluorescence spectroscopy, right-angle light scattering
`measurements, and differential scanning calorimetry.
`Theresults of these studies indicated the following rank
`order of lipid affinity: Ac-18A-NHz > Ac-18A(Lys>Haa)-
`NH, > Ac-18R-NH2. These results are in agreement with
`the “snorkel” model proposed earlier to explain the
`higherlipid affinity of class A amphipathic helixes (Seg-
`rest, J. P., Loof, H. D., Dohlman, J. G., Brouillette, C. G.,
`and Anantharamaiah, G. M.
`(1990) Proteins Struct.
`Funct. Genetics 8, 103-117). In addition, it was observed
`from the differential scanning calorimetry studies that
`Ac-18A-NHz, and Ac-18A(Lys>Haa)-NH, interact more
`strongly than Ac-18R-NH, with negatively charged di-
`myristoyl phosphatidylglycerol. The weaker interaction
`of Ac-18R-NH, with dimyristoyl phosphatidylglycerol is
`suggested to be due to electrostatic repulsion between
`the negatively charged lipid and the interfacial negative
`chargesof the peptide.
`
`
`Exchangeable plasmaapolipoproteins are protein detergents
`and are responsible for carrying lipids in circulation in the form
`of lipoproteins. There is now considerable evidence that the
`structural motif that is responsible for their detergent property
`
`*This research was supported in part by National Institutes of
`Health Program Project HL34343. The costs of publication of this ar-
`ticle were defrayed in part by the paymentof page charges. Thisarticle
`must therefore be hereby marked “advertisement” in accordance with 18
`U.S.C. Section 1734 solely to indicate this fact.
`+ To whom correspondence should be addressed.
`
`is the amphipathic a-helix (1). While many otherproteins and
`biologically active peptides have been found to possess this
`secondary structural motif, the exchangeable apolipoproteins
`are uniquein that they possess multiple copies of amphipathic
`a-helixes with positively charged amino acid residues at the
`non-polar-polar interface and negatively charged amino acid
`residues at the center of the polar face (2). The amphipathic
`a-helixes with this kind of distribution of charged amino acid
`residues in the polar face have been classified as class A (3-5).
`The lipid-associating properties of exchangeable apolipopro-
`teins are believed to reside predominantly in the amphipathic
`helical domains possessing the class A motif (3).
`Onthebasis of the key structural features predicted for the
`lipid-associating properties of the amphipathic helix (1, 2),
`manylaboratories, including ours, have studied structural and
`functional properties of de novo designed peptide analogsof the
`amphipathic helix (6-16). We have addressed the question
`whetheror not the location of charged amino acid residues on
`the polar face of the class A amphipathic helical peptide play a
`role in determiningits lipid affinity (17-19). A model peptide
`with 18 amino acid residues was designed to mimic the general
`features of the amphipathic helix described in the original
`model (2, 17). The model peptide 18A, with primary sequence
`Asp-Trp-Leu-Lys-Ala-Phe-Tyr-Asp-Lys-Val-Ala-Glu-Lys-Leu-
`Lys-Glu-Ala-Phe,in the helical wheel representation hasposi-
`tively charged Lys residuesat the non-polar-polar interface and
`negatively charged Asp and Glu at the centerof the polar face
`(17). To address the question of contribution of interfacial Lys
`residues to the lipid affinity of 18A, a peptide with the same
`aminoacid composition,but the positions of charged aminoacid
`residues reversed, was synthesized. The peptide reverse-18A
`(18R) had the following amino acid sequence: Lys-Trp-Leu-Asp-
`Ala-Phe-Tyr-Lys-Asp-Val-Ala-Lys-Glu-Leu-Glu-Lys-Ala-Phe. A
`helical wheel representation of this sequence shows negatively
`charged amino acid residues Asp and Glu at the non-polar-
`polar interface and positively charged Lys residues at the cen-
`ter of the polar face (17). Studies on these two peptides and
`their analogs showed that class A amphipathic peptides with
`positively charged residuesat the non-polar-polar interface and
`negatively charged residuesat the centerof the polar face have
`higher lipid affinity compared with the corresponding charge-
`reversed peptide analogs (17-20).
`To explain the higherlipid affinity of class A amphipathic
`helixes, the “snorkel” model was proposed(3). The bulk of the
`van der Waals surface area of the positively charged lysine and
`arginine residues is hydrophobic. In the snorkel model, it was
`proposed that the interfacial positively charged amino acid
`residues of the peptide, when associated with lipid, extend
`toward the polar face of the helix to insert their charged moi-
`eties into the aqueous environmentfor solvation. Thus, in the
`snorkel orientation, the entire uncharged van der Waals sur-
`face of the class A amphipathic helix is buried within the hy-
`
`This is an Open Accessarticle under the CC BYlicense.
`
`7185
`
`MSNExhibit 1030 - Page 1 of 7
`MSNv. Bausch - IPR2023-00016
`
`

`

`7186
`
`Lipid Interactions ofAmphipathic Helical Peptides
`
`99.5+%, NMRgrade), and guanidine hydrochloride (99%) were obtained
`drophobic interior of a lipid bilayer.
`from Aldrich. All other chemicals were of highest purity commercially
`Apolipoprotein A-I (apoA-I), the major protein constituent of
`available.
`plasmahigh density lipoproteins, and class A amphipathichel-
`Preparation of Peptide Solutions—Peptide solutions were prepared
`ical peptide analogs have been shownto stabilize the bilayer
`by dissolving the peptide in 4 m guanidine hydrochloride and dialyzing
`structure of phospholipids, and these properties were corre-
`against phosphate-buffered saline (PBS, pH 7.4; KH,PO, 1.47 mm,
`lated to their ability to protect against lytic peptide-induced
`Na,HPO,.7H20 6.45 ma, NaCl 136.89 mm, KC] 2.68 mm) extensively
`(overnight, with at least three buffer changes). All the studies described
`erythrocyte lysis (21). These molecules also exhibit anti-viral
`below were donein the samebuffer. Peptide concentrations were deter-
`and anti-inflammatory properties and protect fatty acid con-
`mined in 4 m guanidine hydrochloride by measuring absorbance at 280
`taining dye-entrapped phospholipid vesicles from albumin-in-
`nM (€gg9 = 7300 m7! cm-!).
`duced leakage (22-24). These properties were attributed to the
`Circular Dichroism—The CD spectra were recorded with an AVIV
`snorkeling effect of interfacial Lys residues in these molecules.
`62DSspectropolarimeter interfaced to a personal computer. Theinstru-
`This snorkeling effect was thought to create a “wedge” cross-
`mentwascalibrated with (1S)-(+)-10-camphorsulfonic acid (30, 31). The
`sectional shape which is responsible for the stabilization of
`CD spectra were measured from 260 to 190 nm every nm with 1 s
`averagingper point, and a 2-nm bandwidth. An 0.01-cm path lengthcell
`phospholipid vesicles (21, 24). It was, therefore, important to
`was used for obtaining the spectra. All CD spectra were signal averaged
`determine if indeed the longer hydrocarbon side chainof inter-
`by adding four scans, base-line corrected, and smoothed. All the CD
`facial Lys residuesincreases the lipid-associating ability, which
`spectra were recorded at 25°C. Temperature was regulated with a
`is a key determinantof the properties of apoA-I and thecorre-
`Lauda RS2circulating water bath. Final peptide concentrations of 100
`sponding peptide analogs.
`po or less were used for obtaining the CD spectra. DMPC multilamellar
`Earlier, we reported that N- and C-terminal protection of 18A
`vesicles suspension was prepared by dissolving a known amountoflipid
`drastically increasedits helicity as well as lipid affinity and the
`(~10 mg) in ethanol in a test tube and evaporating the solvent slowly
`under a stream of dry nitrogen. The residual solvent was removed by
`resulting peptide, Ac-18A-NH, (acetyl-Asp-Trp-Leu-Lys-Ala-
`storing the tube under high vacuum overnight in a vacuum oven at
`Phe-Tyr-Asp-Lys-Val-Ala-Glu-Lys-Leu-Lys-Glu-Ala-Phe-NH,),
`25 °C. To the driedlipid film appropriate volumeof buffer was added to
`closely mimicked the properties of apoA-I (25). In the present
`giveafinal lipid concentration of 14.7 mm. Thelipid film was hydrated
`report, we comparethelipid affinity of Ac-18A(Lys>Haa)-NH,
`by vortexing the mixture for 30 min at room temperature. Peptide-
`(acetyl-Asp-Trp-Leu-Haa-Ala-Phe-Tyr-Asp-Haa-Val-Ala-Glu-
`DMPC complexes for CD studies were prepared as follows. Appropriate
`Haa-Leu-Haa-Glu-Ala-Phe-NHg,) with that of Ac-18A-NH. and
`volume of peptide solution in buffer was added to the DMPC multila-
`mellar vesicles suspension to give lipid to peptide molar ratio of 20:1.
`Ac-18R-NHz__(acetyl-Lys-Trp-Leu-Asp-Ala-Phe-Tyr-Lys-Asp-
`The mixture was incubated overnight at room temperature. This
`Val-Ala-Lys-Glu-Leu-Glu-Lys-Ala-Phe-NH,). The side chain of
`yielded a clear solution of the peptide-DMPC complex.
`Haa residue has two methylene groups less than that of Lys.
`The meanresidueellipticity, {O]mre(deg-cm?-dmol-}), was calculated
`The peptide Ac-18A(Lys>Haa)-NHg wasdesignedto investigate
`using the following equation:
`the role of longer hydrocarbon side chain of the interfacial
`lysine residues in the lipid affinity of Ac-18A-NHg. The three
`peptides were studied for their ability to interact with dimy-
`ristoyl phosphatidylcholine (DMPC), dimyristoyl phosphatidyl-
`glycerol (DMPG), and egg yolk phosphatidylcholine (EYPC)
`multilamellar vesicles. The following criteria were used for the
`lipid affinity of these peptides (26-28):(i) increase in the a-hel-
`ical structure in the presenceof the lipid as detected by far-UV
`CD spectra; (ii) blue-shift in the tryptophan emission maxi-
`mum andshielding from the aqueous-phase quenchers, iodide
`and acrylamide, in the presence of the lipid as monitored by
`steady-state fluorescence spectroscopy;(iii) clarification of the
`turbidity due to EYPC multilamellar vesicles as measured by
`right-angle light scattering; and (iv) reduction in the transition
`enthalpy and broadeningin the gel to liquid-crystalline phase
`transition of the DMPC and DMPG multilamellar vesicles as
`measuredbydifferential scanning calorimetry (DSC).
`
`[luz = MRW-0/10.c.1
`
`(Eq. 1)
`
`where, MRWis meanresidue weightof the peptide, © is the observed
`ellipticity in degrees, c is the concentration of the peptide in g/ml, and
`lis the path length of thecell in centimeters. The percenthelicity of the
`peptide was estimated from the following equation:
`
`% a helix = ({O@],o + 3,000)(36,000 + 3,000)
`
`(Eq. 2)
`
`EXPERIMENTAL PROCEDURES
`
`Materials—Synthesis and purification of the peptide Ac-18A-NH2
`has been described earlier (25). Peptide Ac-18R-NH,2 was synthesized
`and purified following similar methodology (20). For the synthesis ofthe
`peptide Ac-18A(Lys>Haa)-NHp, Boc-Haa(Z), instead of Boc-Lys(2-C1Z),
`was used. The aminoacid derivative was prepared using the procedure
`described elsewhere (29). The other steps in the synthesis and purifi-
`cation were similar to those described earlier for Ac-18A-NH, (25).
`DMPC, DMPG, and EYPC, purity > 99%, were purchased from
`Avanti Polar Lipids, Inc. (Alabaster, AL) and used without further pu-
`rification. Potassium iodide (KI) was obtained from Fisher Scientific
`Company, and acrylamide (>99.9%) was purchased from Bio-Rad. (1S)-
`
`
`
`
`acid (99%), 2,2,2-trifluoroethanol(+)-10-Camphorsulfonic (TFE,
`
`1 The abbreviations used are: apoA-I, apolipoprotein A-I; Boc, terti-
`ary-butyloxycarbonyl, Z, benzyloxycarbonyl; (2Cl)Z, 2-chlorobenzyloxy-
`carbo-nyl; DMPC,1,2-dimyristoyl-sn-glycero-3-phosphocholine; DMPG,
`1,2-dimyristoyl-sn-glycero-3-[phospho-rac-(1-glycerol)(sodium salt);
`EYPC, egg yolk L-a-phosphatidylcholine; NATA, N-acetyltryptophan-
`amide; PBS, phosphate-buffered saline; TFE, 2,2,2-trifluoroethanol;
`DSC, differential scanning calorimetry; Haa, homoaminoalanine; Ac,
`acetyl; NH», carboxamide.
`
`where,[Ole is the meanresidueellipticity at 222 nm (32).
`Fluorescence Measurements—Steady-state fluorescence emission
`spectra were recorded in the ratiometric mode on an SLM 8000C photon
`counting spectrofluorometer (SLM Instruments, Inc., Urbana, IL) at
`25 °C. Excitation and emissionslit widths were both 4 nm.An excitation
`wavelength of 280 nm wasusedfor recording emission spectra. Wave-
`lengths at which maximum emission occurred (Amax) were determined
`by positioning the cursor manually at the peak maximum andreading
`the corresponding wavelength. The final peptide concentration used
`was 14 pM (Aggy = 0.1).
`Fluorescence quenching experiments were performed using 295-nm
`excitation wavelength in order to minimize absorptive screening by the
`quenchersused.Aliquots (10 pl) of freshly prepared potassium iodide (4
`M) or acrylamide (4 M) stock solutions were addedto a constantly stirred
`and thermostated (25 °C) 2-ml peptide solution. After every addition of
`the quencher, the emission spectra were recorded from 310 to 450 nm,
`andthe emission intensity at Ama, were determinedas described above.
`Stock solution of potassium iodide contained 1 mm sodium thiosulfate
`(Na,S,0O3)in order to preventI; formation (33). For acrylamide quench-
`ing, corrections for innerfilter effects (€295 = 0.25 m7? cm", for acryl-
`amide) were made(34). The fluorescence quenching data were analyzed
`according to the Stern-Volmer equation for the collisional quenching
`(35):
`
`(Eq. 3)
`F/F = 1 + Ksy[Q] = 19/7 = 1+ &71Q]
`where, Fy and F are fluorescence intensities in the absence and pres-
`ence of quencher, respectively, K,, is Stern-Volmer constant for the
`collisional quenching process, [QJ is quencher concentration, t) and T
`are fluorescence lifetimes of the flurophore in the absence and presence
`of the quencher, respectively, and k, is the rate constant for the bimo-
`lecular quenching process. The above equation predicts a linearplot of
`F)/F (or 70/1) versus [Q] for a homogeneously emitting solution. The
`slope of this plot yields the valueof K,,.
`
`MSN Exhibit 1030 - Page 2 of 7
`MSNv. Bausch - IPR2023-00016
`
`

`

`Lipid Interactions ofAmphipathic Helical Peptides
`70000
`
`7187
`
`35000
`30000
`soooo tf}
`> 25000}4
`
`60000 §
`=
`>
`g
`=
`40000
`20000 |}
`s
`o
`Qe
`3
`30000
`18000 }
`= '.
`am
`3 }
`a
`» £ +0000
`a8
`oe
`eg
`= §
`5000
`5°.
`o
`a4
`ae
`Ze
`=e
`6
`oo
`cu
`ae
`o
`c~
`v
`-5000
`5
`=
`o=
`10000
`- 10000
`
`= 15000 20000
`
`
`~20000 - 30000190
`
`
`MeanResidueEllipticity(deg.cm™.dmol”')
`Intengity °
`
`190
`
`200
`
`2000000001
`230
`210
`220
`Wavelength (nm)
`
`240
`
`250
`
`260
`
`Wavelength (nm)
`
`: 20000
`10000
`a
`- 10000
`
`200
`
`240
`230
`220
`210
`Wavelength (nm)
`
`250
`
`260
`
`Fic. 1. Far-UV CD spectra of peptides (~100 pm) in buffer (PBS, pH 7.4) (A), 50% (v/v) TFE/PBS (B), and DMPC complex (lipid/
`peptide molarratio 20:1) (C). Ac-18A-NH, (O), Ac-18A(Lys>Haa)-NHe (A), Ac-18R-NH2 (©).
`
`Right-angle Light Scattering Measurements—Theassociation of the
`peptides with EYPC multilamellar vesicles was followed by monitoring
`the rateof clarification of the turbidity due to the vesicles (36). The rate
`of turbidity clarification was measured by right-angle light scattering
`using SLM 8000C photon counting spectrofluorometer with both exci-
`tation and emission monochromatorsset at 400 nm. Data were acquired
`using slow time based acquisition. EYPC multilamellar vesicles sus-
`pension was prepared as described above for the DMPC. The sample
`containing 105 pm EYPC and an equimolar amountof the peptide was
`maintained at 25 °C and wascontinuously stirred. Complete dissolution
`of the EYPC vesicles was achieved by the addition of Triton X-100to the
`vesicles suspension at a final concentration of 1 mm.
`Differential Scanning Calorimetry—Thehighsensitivity DSC stud-
`ies were performed in Microcal MC-2 scanning calorimeter (MicroCal,
`Inc., Amherst, MA) at the scan rate of 20h"? at an instrumentalsen-
`sitivity of 1 and with a filtering constant of 10 s. The lipid multilamellar
`vesicles and the peptide-lipid mixtures for DSC were prepared asfol-
`lows. DMPC or DMPG (~2 mg) wasdissolved in chloroform in a test
`tube anddried by slow evaporation undera stream of dry nitrogen. The
`residual solvent was removed under high vacuum in the vacuum oven
`as described above. To the dried lipid film either buffer alone or buffer
`containing the peptide was added to obtain lipid/peptide molar ratio
`100:1. The lipid was hydrated by vortexing at room temperaturefor 30
`min. The suspension was degassed for 30 min, and an aliquot of 1.2 ml
`of suspension was used and run against buffer in the reference cell.
`Four consecutive scans with 60 min equilibration time between each
`scan were run for the same sample. No significant changes in the
`thermogramswereobserved betweenthefirst scan and the fourth scan.
`The observed transitions were analyzed using software provided by
`MicroCal, Inc., Amherst, MA.
`
`Emission
`
`‘300
`
`finens
`328.«S80:CS75COOSCHCCABT
`Wavelength (nm)
`
`Fic. 2. Fluorescence emission spectra of peptides in buffer
`(PBS, pH 7.4) and peptide-DMPC complexes(lipid/peptide mo-
`lar ratio 20:1). Peptide concentration = 14 uM,excitation wavelength =
`280 nm. Ac-18A-NH, in buffer (©), Ac-18A-NH2-DMPC complex (@),
`Ac-18A(Lys>Haa)-NH,
`in buffer
`(A), Ac-18A(Lys>Haa)-NH2-DMPC
`complex (4), Ac-18R-NH, in buffer (©), Ac-18R-NH».-DMPC complex
`(@).
`
`RESULTS
`
`1B, amongthe three peptides, Ac-18A-NHz has the maximum
`a-helical structure (67%). The a-helical contents ofAc-18R-NH,
`and Ac-18A(Lys>Haa)-NHgare less than that of Ac-18A-NH2
`(61 and 59%, respectively). However, a closer inspection of the
`CD spectra of the peptides in TFE reveals that while Ac-
`18A(Lys>Haa)-NH2 has a zero cross-over point (202.7 nm)
`nearly identical with that of Ac-18A-NHp.(202.6 nm), the zero
`cross-over point of Ac-18R-NHy,is shifted toward a shorter
`CD Studies—Secondary structures of the peptides were de-
`terminedby recording their far-UV CD spectra in buffer (PBS,
`wavelength (202 nm). This indicates that Ac-18A(Lys>Haa)-
`pH 7.4), in 50% (v/v) TFE/PBS,andin the presence of DMPC
`NH,hasa higher a-helical content than Ac-18R-NHgin this
`(lipid/peptide molar ratio 20:1). The CD spectra are shown in
`solvent system (39).
`Fig. 1. The CD spectrum of an a-helix is characterized by two
`The CD spectra of peptide-DMPC complexes (lipid/peptide
`negative bands, one at 222 nm and another at 208 nm, and a
`molarratio 20:1) are shownin Fig. 1C. When complexed with
`positive band at 192 nm (37). The CD spectrum ofAc-18A-NH,
`the lipid, all the three peptides are largely a-helical. The three
`in buffer (Fig. 14) indicates that the peptide is largely helical.
`peptides were estimated to have the following a-helical con-
`As estimated from mean residueellipticity at 222 nm [Oloz0,
`
`tents: Ac-18A-NH, and_Ac-72%, Ac-18R-NH, 62%,
`
`
`the peptide is 55% a-helical. The CD spectrum of Ac-18R-NH2
`18A(Lys>Haa)-NH2 56%. We would like to point out that the
`indicates that it is less helical (43%) than Ac-18A-NH2. The CD
`a-helical content ofAc-18A-NH, in DMPC complex wasearlier
`spectrum of Ac-18A(Lys>Haa)-NHgin buffer is distinct from
`reported to be 92% (25). This value wasrecently found to be an
`the CD spectra of the other two peptides becauseofits greatly
`overestimation becauseof the impropercalibration of the spec-
`reduced meanresidueellipticity values as well as a large shift
`tropolarimeter.
`emission
`fluorescence
`Fluorescence Measurements—The
`in the zero cross-over point (wavelength at which mean residue
`ellipticity is zero). This suggests a largely non-helical structure
`maximumoftryptophanis highly sensitive to its microenviron-
`of the peptide in buffer. The peptide was estimated to have 22%
`ment (40). The microenvironments of tryptophan residues in
`a-helical structure.
`the peptides were probed by recording their emission spectra in
`TFEis a most commonly used structure-inducing, hydropho-
`buffer and in the presence of DMPC(lipid/peptide molarratio
`bic, cosolvent (38). CD spectra of the three peptides in 50% (v/v)
`20:1). The emission spectra are shownin Fig. 2. All three pep-
`TFE/PBSwererecorded to estimate their a-helical contents in
`tides disrupt DMPC vesicles completely at lipid/peptide molar
`a relatively hydrophobic environment. Asis evident from Fig.
`ratio 20:1 resulting in an optically clear solution. In buffer
`
`MSNExhibit 1030 - Page 3 of 7
`MSNv. Bausch - IPR2023-00016
`
`

`

`7188
`
`Lipid Interactions of Amphipathic Helical Peptides
`Tasie I
`Tryptophan emission maxima andfluorescence quenching parameters of the peptides and the peptide-DMPC complexes
`Peptide concentration was 14 pM; lipid/peptide molar ratio was 20:1. Fluorescence emission maxima were determined using excitation wave-
`length of 280 nm; quenching studies were done using excitation wavelength of 295 nm. Kgy is Stern-Volmer quenching constant determined from
`the slopes of the lines for the plots of F,/F-1 versus [@Q]; slopes were determinedby linear regression analysis of the fluorescence quenching data
`using the least squares method.
`
`Amax (nm)
`Kgy (m7!)
`PC
`DMPC
`.
`Peptide
`DMPC
`Buffer,
`DM! 1
`Buffer,
`Buffer
`iodide
`complex,
`acrylamide
`complex,
`complex
`quenching
`ceaidez
`quenching
`aeryomice
`
`Ac-18A-NH2
`343
`329
`5.7
`14
`13.5
`2.6
`Ac-18A(Lys>Haa)-NH2
`344
`331
`7.2
`3.7
`15.5
`6.2
`Ac-18R-NH2
`344
`336
`8.0
`5.4
`17.4
`10.3
`NATA
`350
`ND-
`11.0
`ND
`27.7
`ND
`* Not determined.
`
`Intensity
`ScatteredLight
`
`Time (sec)
`
`Fic. 4. Rate of decrease of scattered-light intensity measured
`at 90° from a 105 pm suspension of EYPC vesicles. Equimolar
`amounts of the peptides were addedto the lipid suspension. Complete
`dissolution was achieved by adding Triton X-100 solution to the lipid
`suspension at a final concentration of 1 mm. Excitation and emission
`wavelengths both were 400 nm. EYPC alone (M), Ac-18A-NHp2 (@), Ac-
`18A(Lys>Haa)-NH,(A), Ac-18R-NH, (), Triton X-100 (C).
`
`To further probe the location of the tryptophan residues of
`the three peptides in the lipid bilayer, fluorescence quenching
`experiments werecarried out. Iodide and acrylamide were used
`as aqueous-phase quenchers of the tryptophan fluorescence
`(35). While iodide is an anionic quencher, acrylamideis a neu-
`tral but polar quencher.Iodide is considered to have access only
`to surface tryptophans, whereas acrylamide has good access to
`all but the most highly buried tryptophan residues (41). The
`Stern-Volmerplots of the quenchingof tryptophan fluorescence
`by iodide and acrylamide are shownin Fig. 3. For comparison,
`Stern-Volmerplots of fluorescence quenching of NATA (N-acet-
`yltryptophanamide), a model compoundfor free tryptophan,in
`buffer by iodide and acrylamide are also included. In buffer,
`compared with NATA,tryptophansin all the three peptides are
`less exposed to the quenchers. In the presence of DMPC, com-
`pared with buffer, tryptophansin all the three peptides become
`less accessible to the quenchers, suggesting shielding by the
`lipid bilayer. However, the extent of shielding from the quench-
`ers is different for the three peptides. In the presence of DMPC,
`compared with buffer, the following order was observed in the
`shielding of the tryptophanresidue of the three peptides from
`the quenchers: Ac-18A-NHz > Ac-18A(Lys>Haa)-NHg > Ac-18R-
`NHg. Thus, amongthethree peptides, tryptophan in Ac-18R-
`NHzexperiencesleast shielding in going from bufferto the lipid
`bilayer. The Stern-Volmer quenchingconstants for a bimolecu-
`lar collisional quenching process were calculated from the ap-
`parent slopes of the plots of F)/F-1 versus [Q] (slopes were
`calculated by linear regression analysis using the “least
`squares” method; 0.989 < r < 0.999) and are given in Table I.
`The Stern-Volmerplots of the fluorescence quenchingbyacryl-
`amidefor the three peptidesas well as that of NATAin solution
`
`MSN Exhibit 1030 - Page 4 of 7
`MSNv.Bausch - IPR2023-00016
`
`0.8
`
`2.0
`
`(F,/FJ-1
`
`20
`
`40
`
`60
`
`100 (20 140
`BO
`[Iodide] mM
`
`180 180 200 220
`
` a
`
`ot
`o
`20
`
`40
`
`—
`160 180 200 220
`100 120 140
`#60
`680
`{Acrylamide] mM
`
`Fic. 3. Stern-Volmer plots of fluorescence quenching of the
`peptides in buffer (PBS, pH 7.4), and peptide-DMPC complexes
`(lipid/peptide molar ratio 20:1) by iodide (A) and acrylamide(B).
`Peptide concentration = 14 pM, excitation wavelength = 295 nm. Ac-
`18A-NH,
`in buffer
`(©), Ac-18A-NH2-DMPC complex (@), Ac-
`18A(Lys>Haa)-NH, in buffer (A), Ac-18A(Lys>Haa)-NH2-DMPC com-
`plex (A), Ac-18R-NH, in buffer (©), Ac-18R-NH,-DMPC complex( @),
`
`NATAin buffer (().
`
`alone, while Ac-18A-NHghasits emission maximum (Aynjqx) at
`343 nm, Ac-18R-NHz and Ac-18A(Lys>Haa)-NH2 both have
`their emission maxima at 344 nm. When complexed with
`DMPC,all the three peptides show anincrease in the emission
`intensity as well as a blue-shift in their emission maxima com-
`pared with those in buffer, indicating partitioning of trypto-
`phan into a more hydrophobic environment. However, the ex-
`tent of the blue-shift in the tryptophan emission maximum,
`compared with thatin buffer, is different for the three peptides.
`In the presence of DMPC, while Ac-18A-NH2 emission maxi-
`mum showsa blue-shift of 14 nm, Ac-18A(Lys>Haa)-NH2 and
`Ac-18R-NH, show blue-shifts of 13 and 8 nm, respectively
`(Table I). This indicates that the tryptophanresidue in Ac-18R-
`NHis in a less hydrophobic environment than the tryptophan
`residues in Ac-18A-NHg and Ac-18A(Lys>Haa)-NHo2.
`
`

`

`A
`
`Temperature (°C)
`
`
`
`Temperature (°C)
`
`Fic. 5. DSC heating thermogramsoflipids and lipid-peptide
`mixtures(lipid/peptide molar ratio 100:1). A, DMPC alone (1.5 mm)
`(i), DMPC + Ac-18R-NH, (ii), DMPC + Ac-18A(Lys>Haa)-NHg (iii),
`DMPC+ Ac-18A-NH,(iv). B, DMPG alone (1.4 mm) (i), DMPG + Ac-
`18R-NH, (ii), DMPG + Ac-18A(Lys>Haa)-NHp (iii), DMPG + Ac-18A-
`NH,(iv).
`
`TasLe II
`Phase transition parameters for lipids and peptide-lipid mixtures as
`determined by DSC
`DMPC concentration 1.5 mm, DMPG concentration 1.4 mw, lipid/
`peptide molarratio 100:1. T,, is the temperature at which excess heat
`capacity is maximum; AH,is calorimetric enthalpy; AHyy is Van’t Hoff
`enthalpy; ATv. is width of the transition at half of the peak heat capac-
`ity.
`
`Sample
`
`DMPC
`DMPC/Ac-18A-NH2
`DMPC/Ac-18A(Lys>Haa)-NH,
`DMPC/Ac-18R-NH.
`DMPG
`DMPG/Ac-18A-NH,
`DMPG/Ac-18A(Lys>Haa)-NH2
`DMPG/Ac-18R-NH,
`
`Tm
`°c
`23.1
`23.0
`23.3
`23.1
`22.3
`22.2
`22.0
`22.1
`
`AA
`AH
`kcal/mol
`4284.4
`1389.6
`1566.8
`2537.5
`1171.1
`480.4
`568.4
`674.3
`
`5.4
`3.3
`4.1
`42
`5.5
`3.0
`3.8
`4.8
`
`AT
`°C
`0.2
`0.6
`0.6
`0.3
`0.6
`0.8
`0.7
`0.4
`
`(Fig. 3B) curve upward, indicating the occurrence of static
`quenching (42).
`Right-angle Light Scattering Measurements—Interactions of
`the three peptides with EYPC were studied by monitoring the
`rate of clarification of the turbidity due to the lipid vesicles
`after addition of the peptide. The results of this study are
`shown in Fig. 4. As has been noted earlier (25), at equimolar
`lipid/peptide ratio, Ac-18A-NHg clarifies the lipid turbidity
`within 30 min. At an identical lipid/peptide molar ratio, while
`the rate of
`turbidity clarification was
`slower with Ac-
`18A(Lys>Haa)-NHg, Ac-18R-NHgfailed to clarify the lipid tur-
`bidity within the duration of the experiment (33 min). A slight
`increase in the turbidity of the lipid suspension was observed
`after the addition of Ac-18R-NHo. The reason for this is not
`clear at present.
`DSC Studies—The thermotropic phasetransition properties
`of DMPC and DMPGmultilamellar vesicles were studied in the
`
`Lipid Interactions ofAmphipathic Helical Peptides
`
`7189
`
`———>
`Endothermic
`Endothermic——>
`
`absence andin the presence of the peptides by DSC. The heat-
`ing endothermsofthe purelipid vesicles and the peptide-lipid
`mixtures(lipid/peptide molar ratio 100:1) are shownin Fig. 5.
`At neutral pH, while DMPC is zwitterionic, DMPG is nega-
`tively charged. Interactionsofthe peptides with DMPGvesicles
`were studied to investigate possible electrostatic interactions
`between thepositively charged aminoacid residuesof the pep-
`tides and the negative charges of the lipid. DMPC vesicles
`alone exhibited endothermic transitions at 13.7 and 23.1 °C,
`which correspondto the pretransition (lamellar to periodic gel)
`andthegel to liquid-crystalline (order-disorder) phase transi-
`tion of the lipid, respectively (43). Addition of peptides to the
`DMPCvesicles resulted in lowering of the transition enthalpy
`and broadeningofthe gel to liquid-crystalline phase transition
`of DMPCvesicles (Table II). Amongthe three peptides, Ac-18A-
`NHcaused the maximalreduction in the enthalpy of the main
`phasetransition, while Ac-18A(Lys>Haa)-NHgis intermediate
`to Ac-18A-NHp and Ac-18R-NH,(Table IT). Noneof the peptides
`changedthe chain-melting temperature(7,,,) of DMPC vesicles
`by more than 0.2 °C. While the pretransition in the DMPC
`vesicles is observed with Ac-18A(Lys>Haa)-NHg2 and Ac-18R-
`NHg,it is not detected in the presence of Ac-18A-NHg. Similar
`to DMPCvesicles, DMPGvesicles exhibited endothermic tran-
`sitions at 11.5 and 22.7 °C, corresponding to the pretransition
`and the main phase transition of the lipid, respectively (44).
`Theeffect of the three peptides on the phase transition prop-
`erties of the DMPGvesicles is similar to that observed with
`DMPC (Table II). The maximum change in T,, of the lipid
`vesicles observed in the presence of the peptides is less than
`0.3 °C. The width at half of the peak height of the main phase
`transition in DMPGis more than that in DMPC (TableII). This
`is presumably dueto the poor packingof the lipid molecules in
`the bilayer because ofelectrostatic repulsion between the nega-
`tive charges in the head group of the phospholipid molecules
`(36).
`
`DISCUSSION
`
`A comparison of the CD spectra of the three peptides in the
`DMPC complex (Fig. 1C) shows the following rank order of
`helicity: Ac-18A-NHgz > Ac-18R-NH, > Ac-18A(Lys>Haa)-NHp.
`While the sameorder is observed in the helicity of the three
`peptides in buffer (Fig. 1A), the helicity of Ac-18A(Lys>Haa)-
`NH,in the presence of TFE is more than that of Ac-18R-NH,
`(Fig. 1B). In the presence of TFE, Ac-18A(Lys>Haa)-NH, was
`estimated to have less helical structure than Ac-18R-NH2
`based on the meanresidueellipticity at 222 nm of the two
`peptides. However, comparison of the zero cross-over point of
`the two peptides revealed that Ac-18A(Lys>Haa)-NH, has more
`helical structure than Ac-18R-NHg(39). It has been pointed out
`that since the shape and zero cross-over of a CD spectrum
`directly reflect the proportional contribution of different sec-
`ondary structures, any genuine change in secondary structure
`would lead to a change in either the shape or the zero cross-
`over, or both,of that spectrum (39). Therefore, it is importantto
`note that a comparison ofhelicity should not be based onellip-
`ticity values alone. The results of the CD studies indicate that
`the lipid affinities of Ac-18R-NHz and Ac-18A(Lys>Haa)-NH,
`areless than the lipid affinity ofAc-18A-NHg.Thelipid affinity
`of Ac-18A(Lys>Haa)-NHp, based on theresults of the CD stud-
`ies alone, is lower than that of Ac-18R-NHg.
`A comparison of the fluorescence emission maxima of the
`peptides, however, reveals that in the DMPC complex, while
`tryptophan in Ac-18A(Lys>Haa)-NH,gis in a less hydrophobic
`environment than the tryptophan in Ac-18A-NHg,it is in a
`more hydrophobic environmentthan the tryptophan in Ac-18R-
`NH,(Table I). These conclusions are further supported by the
`results from the fluorescence quenching stud

This document is available on Docket Alarm but you must sign up to view it.


Or .

Accessing this document will incur an additional charge of $.

After purchase, you can access this document again without charge.

Accept $ Charge
throbber

Still Working On It

This document is taking longer than usual to download. This can happen if we need to contact the court directly to obtain the document and their servers are running slowly.

Give it another minute or two to complete, and then try the refresh button.

throbber

A few More Minutes ... Still Working

It can take up to 5 minutes for us to download a document if the court servers are running slowly.

Thank you for your continued patience.

This document could not be displayed.

We could not find this document within its docket. Please go back to the docket page and check the link. If that does not work, go back to the docket and refresh it to pull the newest information.

Your account does not support viewing this document.

You need a Paid Account to view this document. Click here to change your account type.

Your account does not support viewing this document.

Set your membership status to view this document.

With a Docket Alarm membership, you'll get a whole lot more, including:

  • Up-to-date information for this case.
  • Email alerts whenever there is an update.
  • Full text search for other cases.
  • Get email alerts whenever a new case matches your search.

Become a Member

One Moment Please

The filing “” is large (MB) and is being downloaded.

Please refresh this page in a few minutes to see if the filing has been downloaded. The filing will also be emailed to you when the download completes.

Your document is on its way!

If you do not receive the document in five minutes, contact support at support@docketalarm.com.

Sealed Document

We are unable to display this document, it may be under a court ordered seal.

If you have proper credentials to access the file, you may proceed directly to the court's system using your government issued username and password.


Access Government Site

We are redirecting you
to a mobile optimized page.





Document Unreadable or Corrupt

Refresh this Document
Go to the Docket

We are unable to display this document.

Refresh this Document
Go to the Docket