throbber
18 Number 1 November (II) 1993
`
`European
`
`publicised btwulfly
`
`i0chemistry
`
`Review in this issue
`
`Protein glycosylation
`Structural and functional aspects
`by Halina Lis and Nathan Sharon
`
`Published by Springer International
`on behalf of the
`
`Federation of European Biochemical Societies
`225 Eur.J, Biocham. ISSN 00144956 E lBCAl 218(1) 147211993) November 15. 1993
`Printld on acid has papev
`
`CSL EXHIBIT 1045
`CSL v. Shire
`
`Page 1 of 31
`
`

`

`
`
`
`
`European Journal of Biochemistry
`
`
`
`
`
`
`SUBSCRIPTION INFORMATION
`
`
`
`Advertisements
`
`
`
`
`
`
`
`
`Springer-Verlag, E. LiJckermann. Heidelberger Platz 3,
`
`
`
`
`
`
`
`
`
`0-1419? Berlin, Germany, Tel. +49 (30) 82 07-0, Fax +49
`
`
`
`
`
`(30) 820 7300, Telex 1—8541 1.
`
`
`
`
`Printing
`
`
`
`
`
`
`
`
`Wiesbadener Graphische Betriebe GmbH, Posttach
`
`
`
`
`5026, D-65050 Wiesbaden, Germany.
`
`
`
`
`
`
`
`
`Application to mail at second-class postage rates is
`
`
`
`
`
`
`
`
`pending at New York and additional mailing offices. Post-
`
`
`
`
`
`
`master send all address changes to :
`
`
`
`
`European Journal of Biochemistry
`
`
`
`
`Springer-Verlag New York, Inc.
`
`
`
`
`
`Inc. Journal Fulfilment Services Dept.
`
`
`
`44 Hartz Way
`
`
`
`Secaucus, NJ 07096, USA
`
`publishers on request.
`
`
`
`
`
`
`
`
`It
`European Journal of Biochemistry appears biweekly.
`
`
`
`
`
`
`
`is published by Springer-Verlag Berlin. Heidelberger Platz
`
`
`
`
`
`3, D-14197 Berlin 33, Germany.
`
`
`
`
`
`
`
`
`Volumes 211—218 (three issues each except for a
`
`
`
`
`
`
`
`
`double issue in January) will appear in 1993.
`
`
`
`
`
`
`
`
`North America. Recommended subscription price:
`
`
`
`
`
`
`
`
`
`US$ 2196.00 per year, US$ 108.00 per issue,
`including
`
`
`
`
`
`
`
`postage. Address orders and enquiries to Springer-Verlag
`
`
`
`
`
`
`
`
`
`New York Inc., Service Center Secaucus, 44 Hertz Way,
`
`
`
`
`
`
`
`
`
`
`
`Secaucus NJ 07094 USA; Tel. +1 (201) 348 4033, Fax +1
`
`
`
`
`
`
`(201) 348 4505, Telex 023 125994.
`
`
`
`
`
`
`
`All other countries. Recommended subscription price:
`
`
`
`
`
`
`
`
`
`
`DM 3152.00 per year, plus DM 204.00 postage, except for
`
`
`
`
`
`
`
`
`
`the Federal Republic of Germany, DM 33.46, and the fol-
`
`
`
`
`
`
`
`lowing countries where Surface Air Lifted is mandatory:
`
`
`
`
`
`
`
`
`Australia and New Zealand. India, Japan. Airmail and SAL-
`
`
`
`
`
`
`
`
`
`rates to other countries are available upon request. Volume
`
`
`
`
`
`
`
`
`
`price, DM 394.00; single issue price, DM 157.60. Address
`
`
`
`
`
`
`
`orders and enquires to Springer-Vertag. Heidelberger Platz
`
`
`
`
`
`
`
`
`
`
`
`
`3, 0-1419? Berlin 33. Germany; Tel. +49 (30) 82 0 71, Fax
`
`
`
`
`
`
`
`
`
`
`
`
`
`+49 (30) 820 73 00, Telex 1-83 319, or order from your
`bookseller.
`
`
`
`
`
`
`
`
`
`
`
`
`Change of address. Please include both old and new
`
`
`
`
`
`
`
`
`
`addresses and a recent mailing label; allow six weeks.
`
`
`
`
`
`
`
`
`Back volumes. Prices available on request.
`
`
`
`
`
`
`
`
`Microfiim editions. Available from University Microfilms
`
`
`
`
`
`
`
`
`international, 300 North Zeeb Ftoad, Ann Arbor, MI 48106,
`USA.
`
`
`
`
`
`
`
`
`
`
`
`
`
`Offprints. Authors receive 50 offprints free of charge.
`
`
`
`
`
`
`
`
`
`
`More may be ordered at cost when page proofs are re-
`
`
`
`
`
`
`
`
`
`turned to the publisher. Authors may reproduce their own
`
`
`
`
`
`
`
`
`
`articles after publication in the Journal if the reproductions
`
`
`
`
`
`
`
`
`
`
`give full reference to the Journal and are not sold.
`
`
`
`
`
`
`
`
`
`
`Copyright and liability
`
`
`
`
`
`
`
`The exclusive copyright for all languages and countries,
`
`
`
`
`
`
`including the rights for photographic reproduction, elec-
`
`
`
`
`
`
`
`
`
`
`tronic data basa, video disks, or any other type at repro-
`
`
`
`
`
`
`
`
`
`
`duction of text, figures or tables from the Journal in any
`
`
`
`
`
`
`
`
`form, including microfilm, belongs to the Federation of Eu-
`
`
`
`
`
`
`ropean Biochemical Societies (FEES). Individuals may re-
`
`
`
`
`
`
`
`
`
`produce material published in the Journal
`in reviews or
`
`
`
`
`
`
`
`
`
`
`books it they acknowledge the origin of the material, and
`
`
`
`
`
`
`
`
`obtain permission from the author(s),
`if this condition ap-
`
`plies.
`
`
`
`
`
`
`
`
`The use ot general descriptive names, trade names,
`
`
`
`
`
`
`
`
`
`trade marks, etc., in this publication, even it not specifically
`
`
`
`
`
`
`
`
`
`
`identified,
`is not to be interpreted as exemption from the
`
`
`
`
`
`relevant protective laws and regulations.
`While the advice and information in the Journal are be-
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`lieved to be true and accurate at the date of going to press,
`
`
`
`
`
`
`
`
`
`neither the authors, the editors nor the publisher can ac'
`
`
`
`
`
`
`
`
`cept legal responsibility for any errors or omissions that
`
`
`
`
`
`
`
`
`
`may be made. The publisher gives no warranty with re-
`
`
`
`
`
`
`spect to the material contained herein.
`
`
`
`
`
`Production
`
`
`
`
`
`
`
`
`
`
`
`Federation of European Biochemical Societies, 1993
`
`
`
`
`
`
`
`
`Springer-Verlag, S. Forster, G. Schanno. B. Gartner,
`
`
`
`
`
`
`
`Journal Production Department II, Posttach 105 280, D-
`
`
`
`
`
`
`69042 Heidelberg, Germany; Address for courier, express
`
`
`
`
`
`
`and registered mail: Tiergartenstrasse 17, D-69121 Heidel-
`
`
`
`
`
`
`
`
`
`
`
`
`berg, Germany. Tel. +49 (62 21) 48 73 67, Fax +49 (62 21)
`48 76 25, Telex 4—61723.
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`This journal is included in the ADONIS service, where-
`
`
`
`
`
`
`
`
`
`
`by copies of individual articles can be printed out from com-
`
`
`
`
`
`
`
`
`pact discs (CD-FiOM) on demand. An explanatory leaflet
`
`
`
`
`
`
`
`
`
`
`giving further details of the scheme is available from the
`
`
`
`
`A4
`
`
`
`Page20f31
`
`
`
`Page 2 of 31
`
`

`

`
`
` European Journal of Biochemistry
`
`
`
`
`
`
`
`
`
`
`
`
`VOIume 218 Number1 November (Ill 1993
`
`
`
`
`
`Protein chemistry and structure
`
`Sequence and expression of the gene en-
`
`
`
`
`
`
`
`
`
`
`coding the respiratory nitrous-oxide reduc-
`tase from Paracoccus denitrificans — New
`
`
`
`
`
`and conserved structural and regulatory
`
`
`
`
`
`motifs
`
`Frank U. Hoeren, Ben C. Berks,
`
`
`
`
`
`
`
`
`
`
`
`Stuart J. Ferguson, John E. G. McCarthy
`
`
`
`Refined crystal structure of phycoerythrin
`
`
`
`
`
`
`from Porphyrio‘ium cruentum at 0.23-nm
`
`
`
`resolution and localization of the 1' subunit
`
`
`
`
`
`Flaif Ficner, Robert Huber
`
`
`
`
`
`
`
`Characterization of the post—translational
`
`
`
`
`
`
`
`
`
`modifications in tubulin from the marginal
`band of avian erythrocytes
`
`
`
`
`
`
`
`Manfred Riidiger, Klaus Weber
`
`
`
`
`
`
`
`Identification of O-linked oligosaccharide
`
`
`
`
`
`
`
`
`
`
`
`Chains in the activation peptides of blood
`
`
`
`
`
`
`
`coagulation factor X — The role of the car-
`
`
`
`
`
`
`bohydrate moieties in the activation of fac-
`tor X
`
`
`Keisuke inoue, Takashi Morita
`
`
`
`
`
`
`
`
`
`
`
`
`Complete amino acid sequences of five di-
`meric and four monomeric forms of metal-
`
`
`
`
`
`
`
`
`
`
`
`
`lothionein from the edible mussel Mytilus
`edulis
`
`Elaine A. Mackay, Julian Overneii,
`
`
`
`
`
`
`
`
`Bryan Dunbar, lan Davidson,
`Peter E. Hunziker, Jeremias H. R. Kagi,
`
`
`
`
`
`
`
`
`
`John E. Fothergili
`Recombinant coho salmon insulin-like
`
`
`
`
`
`
`
`
`
`growth factor I 7 Expression in Escherichia
`coli, purification and characterization
`
`
`
`
`
`
`Shunsuke Moriyama,
`
`Stephen J. Duguay, J. Michael Conlon,
`
`
`
`
`
`
`
`
`Cunming Duan, Walton W. Dickhoff,
`
`
`
`Erika M. Plisetskaya
`
`
`
`
`
`
`
`
`
`
`Structure and dynamics of the acidic com-
`
`
`
`
`
`
`
`
`
`
`
`pact state of apomyoglobin by frequency-
`domain fluorometry
`
`
`Ettore Bismuto, Enrico Gratton,
`
`
`
`
`
`
`
`ivana Sirangelo, Gaetano lrace
`
`
`
`Non—cooperative effects of glucose and 2'
`
`
`
`
`
`deoxyglucose on their metabolism in Sec-
`
`
`
`
`
`charornyces cerevisiae studied by 1H-NMFi
`
`
`
`
`
`
`
`and 1aC-NMR spectroscopy
`Martina Herve, Jaime Wietzerbin,
`
`
`
`Son Tran-Dinh
`
`
`
`
`
`
`
`Effect of lysine ionization on the structure
`
`
`
`
`
`
`and electrochemical behaviour of the
`
`
`
`
`
`Met44-9Lys mutant of the blue—copper pro—
`
`
`
`
`
`
`
`
`
`
`tein azurin from Pseudomonas aeruginosa
`Mart Van De Kemp, Gerard W. Centers,
`
`
`
`
`
`
`
`Colin R. Andrew; Joann Sanders-Loehr,
`
`
`
`
`
`Christopher J. Bender, Jack Peisach
`
`
`
`
`
`
`
`
`1727
`
`
`29—37
`
`
`
`39—48
`
`957102
`
`
`
`129—141
`
`
`
`143—151
`
`
`173—181
`
`
`
`1957204
`
`
`
`49—57
`
`
`103—106
`
`
`
`107—116
`
`
`153—163
`
`
`183—194
`
`
`
`205—21 1
`
`
`2137219
`
`221—228
`
`229-238
`
`
`
`
`
`
`
`A5
`
`
`
`
`
`Contents
`
`
`
`Reviekx
`
`Protein glycosylation — Structural and func-
`
`
`
`
`
`tional aspects
`
`
`Halina Lis, Nathan Sharon
`
`
`
`
`
`
`
`
`
`Nuclic acids, protein synthesis
`
`
`
`and molecular genetics
`
`
`
`-
`
`
`
`
`
`Phenotype of recombinant Leishmania do—
`
`
`
`
`
`novani and Trypanosoma cruzi which
`
`
`
`over-express trypanothione reductase —
`
`
`
`
`
`Sensitivity towards agents that are
`
`
`
`
`
`thought to induce oxidative stress
`
`
`
`
`
`
`John M. Kelly, Martin C. Taylor,
`Keith Smith, Karl J. Hunter,
`
`
`
`
`
`Alan H. Fairiamb
`
`
`
`
`
`
`
`
`Increased phosphorylation of eukaryotic
`initiation factor 4;; during early activation
`
`
`
`
`
`
`
`
`
`
`of T lymphocytes correlates with in-
`creased initiation factor 4F complex for-
`
`
`
`
`
`mation
`
`
`
`
`
`Simon J. Morley, Michaei Rau,
`John E. Kay, Virginia M. Pain
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`
`{Analysis of the DNA topoisomerase-II-me-
`
`
`
`
`
`
`d‘iated cleavage of the long terminal re-
`
`
`
`
`
`peat of Drosophiia 1731 retrotransposon
`Evelyne Nahon, Martin Best-Beipomme,
`
`
`
`Jean~Marie Saucier
`
`
`
`
`
`
`
`
`
`
`Mouse gelatinase B — cDNA cloning, regu-
`
`
`
`
`
`
`lation of expression and glycosylation in
`
`
`
`
`¥VEHl-3 macrophages and gene organisaa
`Ion
`
`
`
`
`
`
`
`Stefan Masure, Guy Nys, Pierre Fiten,
`
`
`
`
`
`Jo Van Damme, Ghisiain Opdenakker
`
`
`
`
`
`Qaterminants of the brain-specific expres-
`
`
`
`
`
`
`
`
`
`saon of the rat aldolase C gene: ex vivo
`
`
`
`
`and in vivo analysis
`
`
`
`Muriel Thomas, iman Makeh,
`Pascale Briand, Axel Kahn,
`
`
`
`
`Henriette Skala
`
`
`
`
`
`
`
`
`N_ueleotide sequence and promoter-spe-
`
`
`
`
`
`CIfic effect of a negative regulatory region
`
`
`
`
`
`located upstream of the mouse prolifers
`
`
`
`
`
`ating cell nuclear antigen gene
`
`
`Shuhei Matsuoka,
`
`
`
`Masamitsu Yamaguchi, Yuko Hayashi,
`
`
`Akio Matsukage
`
`
`
`
`
`
`
`
`
`
`Anomalous interaction of Sp‘l and specific
`binding of an E-box-binding protein
`
`
`
`
`
`
`
`
`
`
`
`With the regulatory elements of the
`
`
`
`
`a.K—ATPase a2 subunit gene promoter
`
`
`
`
`Kerko ikeda, Kei Nagano,
`Kiroshi Kawakami
`
`
`
`
`
`
`
`Page 3 of31
`
`Page 3 of 31
`
`

`

`
`Contents (Continuation)
`
`
`
`
`
`
`
`Partial purification and characterization of
`
`
`
`
`
`a circulating hypertensive factor in sponta—
`
`
`
`
`
`
`
`
`neously hypertensive rats
`Hartmut Schiiiter, Brigitte Kluth,
`
`
`
`
`
`Regina Borjesson-Stoll,
`Eckhard Nordhoff, Waiter Zidek
`
`
`
`
`Investigation of the oxygenation of phos—
`
`
`
`
`
`pholipids by the porcine leukocyte and
`
`
`
`
`
`
`human platelet arachldonate 12-lipoxy-
`
`
`
`genases
`
`Yoshitaka Takahashi,
`
`
`
`
`
`
`
`Wayne C. Glasgow, Hiroshi Suzuki,
`Yutaka Taketani, Shozo Yamamoto,
`
`
`
`
`Monika Anton, Hartmut Kilhn,
`
`
`
`
`Alan Fl. Brash
`
`
`
`
`
`
`
`Membranes and bioenergetics
`Permeability properties of peroxisomes in
`
`
`
`
`
`
`
`digitonin-permeabilized rat hepatocytes —
`Evidence for free permeability towards a
`
`
`
`
`
`
`variety of substrates
`
`
`
`Nicolette Verleur, Ronald J. A. Wanders
`
`
`
`
`
`
`
`
`
`
`67—73
`
`
`
`165—171
`
`
`
`7 5—82
`
`
`
`Effects of glycosylation on protein strucr
`
`
`
`
`
`ture and dynamics in ribonuclease B and
`
`
`
`
`
`
`
`
`
`
`
`some of its individual glycoforms
`
`Heidi C. Joao, Raymond A. Dwek
`
`
`
`
`
`
`
`
`
`239*244
`
`
`
`G|y387 of murine ornithine decarboxylase
`
`
`
`
`is essential for the formation of stable ho-
`
`
`
`
`
`
`
`modimers
`
`Karin E. Tobias,
`
`
`
`Emanueile Mamroud—Kidron,
`
`Chaim Kahana
`
`
`
`
`
`
`
`245~250
`
`
`
`Enzymology
`
`
`
`
`
`
`Structure/activity relationships in porphobi-
`Iinogen oxygenase and horseradish peroxi~
`
`
`
`
`dase — An analysis using synthetic hemins
`
`
`
`
`
`
`Marcelo Fernandez, Rosalia B. Frydman,
`
`
`
`
`
`
`
`
`
`Jorge Hurst, Graciela Buldain
`
`2514259
`
`Reconstitution of holotransketolase is by a
`
`
`
`
`
`
`
`
`thiamin-diphosphate-magnesium complex
`Christine K. Booth, Peter F. Nixon
`
`
`
`
`
`
`2617265
`
`
`
`
`
`
`
`
`
`
`
`
`
`The separate roles of plant cis and trans
`prenyl transferases in cisa‘l,4rpolyisoprene
`
`
`
`biosynthesis
`
`Katrina Cornish
`
`
`
`
`
`
`267—271
`
`
`
`
`
`
`
`Carbohydrates, lipids and other natural products
`
`
`
`Structure/activity relationship of leuko—
`
`
`
`triene B4 and its structural analogues in
`
`
`
`
`
`
`
`chemotactic, lysosomaI-enzyme release
`
`
`
`and receptor—binding assays
`
`
`
`
`
`
`
`Olukayode Soyombo, Bernd W. Spur,
`Cecilia Soh, Tak H. Lee
`
`
`
`
`
`
`
`
`59766
`
`
`
`
`
`Page 4 of31
`
`
`
`
`
`
`
`Molecular cell biology and metabolism
`Aminoacyl chloromethanes as tools to
`
`
`
`
`
`study the requirements of NADPH oxidase
`
`
`
`
`
`activation in human neutrophils
`
`
`
`
`Emmanuelie Chollet-Przednowed,
`
`Florence Lederer
`
`
`Molecular analysis of chicken embryo
`
`
`
`
`
`SPARC (osteonectin)
`
`
`James A. Bassuk,
`
`
`
`
`M. Luisa lruela-Arispe, Timothy F. Lane,
`
`
`
`
`
`
`
`
`
`Janice M. Benson, Flichard A. Berg,
`E. Helene Sage
`
`
`
`Indexed in Current Contents
`
`
`
`
`
`
`
`
`
`
`83433
`
`
`
`1177127
`
`
`
`
`
`Page 4 of 31
`
`

`

`Eur. J. Biochem . 218, 1-27 (1993)
`© FEBS 1993
`
`Review
`
`Protein glycosylation
`Structural and functional aspects
`
`Halina LIS and Nathan SHARON
`Deparunent of Membrane Research and Biophys ics, The We izmann lnstitute of Science. Rehovot, Israel
`
`(Received April 16/July 15, 1993) - EJB 93 0558/0
`
`During the Jast decade, there have been enormous advances in o ur knowledge of glycoproteins
`and the stage has b'een set for the bio technological production of many of them for therapeutic use.
`These advances are reviewed, with special emphasis on the structure and function of the glycopro(cid:173)
`teins (excluding the proteoglycans). Current methods for structural analysis o f g lycoproteins are
`surveyed, as are nove] carbohydrate - peptide linking groups, and mono- and o ligo-saccharide con(cid:173)
`stituents found in these macromolecules. The possible roles of the carbohydrate units in modulating
`the physicochemical and biological properties of the parent proteins are discussed, and evidence is
`presented on their roles as recognitio n determinants between molecules and cells, or cell and cells.
`Finally, examples are given of changes that occur in the carbohydrates of soluble and cell-surface
`glycoproteins during differentiation, growth and malignancy, which further high light the important
`role of these substances in health and disease.
`
`Among the different types of covalent modifications that
`newly synthesized proteins undergo in living organisms,
`none is as common as glycosylation (1 - 6]. It is also the
`most diverse, both with respect to the kinds of amino acid
`that are modified and the structures attached. The origins for
`this diversity are chemical as well as biological. The former
`results from the ability o f monosaccharides to combine with
`each other in a variety of ways that differ not only in se(cid:173)
`quence and chain length, but also in ano mery (a or {J), posi(cid:173)
`tion of linkages and branching po ints. Further structural di(cid:173)
`versification may occur by covalent attachment of sulfate,
`phosphate, acetyl or methyl groups to the sugars. Therefore,
`in theory, an enormo us variety of glycans, both oligosaccha(cid:173)
`rides and polysaccharides, can be generated from a relatively
`limited number of monosaccharides. Biological diversity de(cid:173)
`rives from the fact that, whereas proteins are primary gene
`products, g lycans are secondary gene products. As a result,
`glycosylation is species- and cell-specific, and is determined
`as well by the structure of the protein backbone and the car(cid:173)
`bohydrate attachment site. This means that glycosylation of
`any protein is dependent on the cell or tissue in which it is
`produced and that the po lypeptide encodes informatio n that
`directs its own pattern of g lycosylation.
`ln an individual g lycoprotein more than one carbo hyd rate
`unit is often present, attached at different positions by either
`an N-linkage, an 0 -linkage or both . Moreover, each attach-
`
`to N. Sharon, Depan ment of Membrane
`Correspondence
`Research and Bio physics, The Weizmann lnstitute of Science,
`IL-76100 Rehovot, Israel
`Abbreviations. C HO, Chinese hamster ovary; GIPtdlns, glyco(cid:173)
`syl-phosphatidylinositol; GM-CSF g ranulocyte-macrophage colon y
`stimulating facto r ; hCG, human c horio nic gonado tropin ; LH, Iuto(cid:173)
`tropin ; N-CAM, neural cell adhesion molecule; tPA, tissue plasmin(cid:173)
`ogen activator.
`
`ment site frequently accommodates different glycans, a phe(cid:173)
`nomeno n referred to as site heterogeneity. This resul ts in
`microheterogeneity of the whole molecule and creates
`discrete subsets, or g lycoforms, o f a glycoprotein that have
`different physical and biochem ical properties, which, in tum,
`may lead to functional di versity [7]. ln short, glycosylation
`of a polypeptide usually generates a set of glycoforms, ail o f
`which share an identical backbone but are dissimilar either
`in the structure or disposi tio n of their carbohydrate units or
`in both. The earlier view that heterogeneity o f the carbohy(cid:173)
`drates of glycoproteins is random, mainly d ue to the lack of
`fidelity in their synthesis, seems no longer tenable, since the
`relative proportions o f such glycoforms appear to be repro(cid:173)
`ducible and highly regulated. They depend on the cellular
`environment in which the protein is g lycosylated and may
`therefore vary with the type, as well as the physio logical
`state, of the o rganism, tissue or cell in which the glycoprotein
`is made.
`The ubiquity of glycosylation is well established. It oc(cid:173)
`curs without exception in integral membrane proteins of
`higher organisms and is quite commo n w ith secretory pro(cid:173)
`teins. For instance, in blood serum, almost all proteins are
`g lycosylated, as are those in hen egg white. Glycoproteins
`are now known to occur also in the cytoplasm and nucleus
`[8]. Whereas bacteria were for a long time considered to lack
`the ability to synthesize glycoproteins, this now appears not
`to be the case. Many species of archaebacteria, as well as of
`eubacteria, produce glycoproteins, although mostly of types
`not found in other organisms (9-11 ).
`During the last decade, there has been a vast expansion
`in our knowledge of the distribution of g lycopro teins in na(cid:173)
`ture, and of their structure, biochemistry and biosynthesis;
`important insights have also been obtained into their roles.
`Detection and isolation of g lycoproteins have been facili-
`
`Page 5 of 31
`
`

`

`2
`
`1982
`
`GlcNAc
`N
`
`Asn
`
`GalNAc Gal
`Man
`Xyl
`0
`0
`
`L-Fuc Gal
`0
`0
`
`L-Ara
`Gal
`0
`
`COOH
`
`1992
`
`GalNAc
`Glc
`GlcNAc
`L-Rha
`N
`
`GalNAc Gal
`GlcNAc Glc
`Xyl
`Man
`0
`0
`
`L-Fuc Gal
`0
`0
`
`L-Ara
`Gal Glc
`0
`0
`
`H2N
`Fig. 1. Protein-carbohydrate linkages known in 1982 and in
`1992. GPI stands for glycosyl-phosphatidylinositol.
`
`CO-GPI
`
`tated, not the least thanks to the availability of an increasing
`range of lectins with a wide spectrum of specificities which
`are capable of distinguishing subtle differences in the struc(cid:173)
`ture of oligosaccharide units of glycoproteins (12- 14). Re(cid:173)
`finements of known separation and analytical methods, as
`well as introduction of new technologies, have made it pos(cid:173)
`sible to determine complex glycan structures at the nano(cid:173)
`mole, and sometimes even picomole, level in relatively short
`periods of time. As a consequence, the number of known
`structures of carbohydrate units of glycoproteins has grown
`immensely and the early assumption, that living organisms
`form .only an exceedingly small fraction of the theoreticaJly
`possible molecular permutations of the dozen or so monosac(cid:173)
`charides typically found in glycoconjugates, seems no longer
`justified. Not only have nove! structures been discovered,
`but so too have new monosaccharide constituents and new
`linkages between the peptide backbone and the carbohydrate
`unit. The latter point is illustrated in Fig. 1 which compares
`the linkages known today with those known a decade earlier.
`The nove! linkages include, in addition to hitherto unknown
`N- and 0-glycosidic bonds, the glycosyl-phosphatidylinositol
`(G!Ptdlns) anchor, a new class of widely occurring linkage,
`where the carbohydrate is attached to the C-terminal amino
`acid of the protein via ethanolamine phosphate (1 5-18]. It
`should be noted, however, that this kind of attachment of
`carbohydrate to the protein is not a glycosylation process in
`the strict sense, since the sugar is not bound to the polypep(cid:173)
`tide chain by a glycosidic linkage ; it has been termed 'glypi(cid:173)
`ation'.
`Striking advances have been made in synthetic carbohy(cid:173)
`drate chemistry. Linear or branched oligosaccharides con(cid:173)
`sisting of up to a dozen units, as well as different glycopep(cid:173)
`tides, can now be produced in the laboratory ; these include
`constituents of N- and 0-glycoproteins and of the GIPtdlns
`anchor (1 9, 20]. Simple procedures for enzymatic synthesis
`of oligosaccharides, at a hundred milligram scale using im(cid:173)
`mobilized enzymes, have also become available [21, 22].
`Nevertheless, synthesis of most oligosaccharides found in
`glycoproteins is still difficult (or impossible), as is the scaling
`up of the synthetic procedu res to the gram Jevel. The syn(cid:173)
`thetic products are widely employed as reference com(cid:173)
`pounds, for the investigation of specificity and structure/
`function relationships of enzymes, lectins, antibodies, etc.
`Their application as potential drugs, e.g. for prevention of
`microbial infections or inflammation, is under intensive in(cid:173)
`vestigation. Conjugation of oligosaccharides of known struc-
`
`ture to proteins (e.g. bovine serum albumin) affords ' neogly(cid:173)
`coproteins' with desirable carbohydrate units [23]. These
`compounds too are useful for probing the specificity of car(cid:173)
`bohydrate-binding proteins and as affinity matrices for the
`isolation of such proteins. In addition, they serve as imrnuno(cid:173)
`gens for the production of antibodies against oligosaccha(cid:173)
`rides and in studies of the role of the carbohydrate in glyco(cid:173)
`proteins.
`Progress has been made in our knowledge of the three(cid:173)
`dimensional structures of oligosaccharides, both free and
`protein-linked, based on nuclear magnetic resonance (NMR),
`various modelling techniques and X-ray crystallography
`[24 - 30]. lt has become apparent that, in solution, the oligo(cid:173)
`saccharides are flexible molecules that can adopt different
`conformations, only a few of which are recognized by carbo(cid:173)
`hydrate-specific proteins.
`The principal biosynthetic pathways leading to the pro(cid:173)
`duction of mature glycoproteins by glycosyltransferases, gly(cid:173)
`cosidases and carbohydrate-modifying enzymes, and in par(cid:173)
`ticular the fi ne detail s of the dolichol phosphate cycle, in
`which the Glc3Man 9(GlcNAc)2 precursor of the commonly
`is synthesized , have been
`occurring N-oligosaccharides
`known for some time [31]. White much attention is still be(cid:173)
`ing given to purification and characterization of the enzymes
`involved, and to the reactions they catalyze, emphasis has
`shifted to topological aspects, control mechanisms and mo(cid:173)
`lecular biology of glycosylation. Under intense investigation
`are problems such as subcellular sites of glycosylation, trans(cid:173)
`location of sugars from the cytoplasmic face to the lumen of
`the endoplasmic reticulum and the Golgi apparatus, traffick(cid:173)
`ing between organelles (e.g. from the Golgi to lysosomes)
`and, most importantly, regulation of glycoprotein processing
`and maturation. Much of our knowledge in these areas has
`been obtained with the aid of mutant mammalian cell lines,
`selected mostly by virtue of the ir resistance to the toxic ac(cid:173)
`tion of lectins and shown to be deficient in certain enzymes
`involved in individual steps of protein glycosylation [32].
`Another source of information cornes from the use of specific
`inhibitors of transferases (e.g. tunicamycin) and of glycosi(cid:173)
`dases (such as castanospermine, nojirimycin and swain(cid:173)
`sonine) [33, 34]. Mapping of the subcellar sites of protein
`glycosylation is aided by the use of lectins and of antibodies
`to purified glycosylated enzymes [35, 36].
`New approaches became available with the emergence of
`genetic engineering techniques. For instance, oligonucleo(cid:173)
`tide-directed mutagenesis allows for specific changes in the
`primary structure of glycoprote ins and faci litates the exami(cid:173)
`nation of factors governing site-speci tïc glycosylation and
`oligosaccharide processing. ln glycoproteins with more than
`one glycan, mutagenesis provides insights into the contribu(cid:173)
`tion of each glycan to the overall properties of the molecule.
`Evidence has accumulated for the existence of proteins
`which mediate the transport of sugar nucleotides across the
`membranes of the endoplasmic reticulum and the Golgi ap(cid:173)
`paratus [37, 38]. The transporters, or antiporters, facilitate the
`entry of the sugar donor into the lumen of these organelles in
`a reaction coupled to the equimolar exit of the corresponding
`nucleoside monophosphate. Sorne of the transporters have
`been partially purified and shown to be both organelle- and
`substrate-specific.
`The role of the Golgi complex in the ordered remodelling
`of N-oligosaccharide chains and the biosynthesis of 0 -gly(cid:173)
`cans is firml y established [35, 37]. lt has also become clear
`that this organelle consists of a series of functionally distinct
`compartments: cis, media! and trans. As glycoproteins pass
`
`Page 6 of 31
`
`

`

`through these compartments, they acquire their 0 -units,
`while the N-oligosaccharides, the precursor of which is at(cid:173)
`tacbed to the growing polypeptide chain in the endoplasmic
`reticulum, undergo a series of sequential trimming and elon(cid:173)
`gation reactions, as if on an assembly line [36). The genes
`coding for the relevant enzymes are being cloned and se(cid:173)
`quenced at an increasingly fast rate; studies on their regula(cid:173)
`tion are in progress [39-42). A recent milestone is the clon(cid:173)
`ing and sequencing of the cDNAs which code for the glyco(cid:173)
`syltransferases that determine human blood types A, and B
`( a-1,3-N-acety lgalactosam i ny ltransferase and a-1,3-galacto(cid:173)
`syltransferase, respectively), and of the corresponding cDNA
`from cells of the H(O) type [43). The deduced sequences for
`the two transferases differ only in four arnino acid residues,
`while a critical single base deletion found in the O individ(cid:173)
`uals is predicted to give rise to an entirely different protein
`which would be expected to be nonfunctional.
`Severa! glycosyltransferases have been shown Lo exhibit
`branch specificity, which accounts for the marked differences
`in chain length sometimes fourid between different branches
`of the same glycan f 44). An insight into the mechanism by
`whicb the protein backbone may control glycosylation was
`provided by the finding that, in addition to the combining
`site(s) for the sugar donor and acceptor, glycosyltransferases
`can contain a site that recognizes certain features in the pep(cid:173)
`tide moiety of the acceptor glycoprotein [45).
`Recent work has clarified several aspects of the catabo(cid:173)
`lism of N-glycoproteins [46). ln this process, a series of lyso(cid:173)
`somal enzymes act in a highly ordered manner to ensure the
`complete degradation of glycoproteins. lt is achieved by step(cid:173)
`wise hydrolysis of the major portion of their glycans by a set
`of exo-glycosidases, followed by the disassembly of the pro(cid:173)
`tein and the carbohydrate - peptide linkage region. An alter(cid:173)
`native pathway for the degradation of glycoproteins starts
`with proteolysis of the polypeptide backbone and involves
`the participation of specific endoglycosidase(s) [47, 48). The
`physiologica1 importance of high precision in the lysosomal
`degradative system is clearly illustrated by the occurrence of
`serious, often fatal, disorders in indi viduals with genetic de(cid:173)
`fects in glycosidase production [49, 50]. Details of the degra(cid:173)
`dation of 0 -glycans are largely unknown but, as recently
`shown, in this case, too, genetic defects in glycosidase pro(cid:173)
`duction may lead to serious disorders (51].
`The fact that the carbohydrate units of glycoproteins have
`been conserved in evolution and the growing awareness of
`the widespread occurrence and structural diversity of glyco(cid:173)
`proteins, coupled with the realization that oligosaccharide
`Structures of glycoproteins sometimes undergo drarnatic
`~hanges with differentiation and in pathological processes,
`mtensified the search for their biological role(s). The ability
`~f the carbohydrate groups to modulate the physical proper(cid:173)
`ties of the protein to which they are attached, especially the
`overall folding of the nascent polypeptide chain, as well as
`to protect it against proteolysis, is well documented [1 -4].
`More importantly, there is increasing evidence for the con(cid:173)
`Cept, formulated over 20 years ago [52], that carbohydrates
`act as recognition deterrninants in a variety of physiological
`llnd pathological processes (7, 53 - 57]. These include clear(cid:173)
`ance of glycoproteins from the circulatory system [52], intra(cid:173)
`Cellular trafficking of enzymes [58] and a wide range of
`Cell-cell interactions, from the attachment of sperm to ova
`(59], to adhesion of infectious microorganisms to host tissues
`(60-62]. Particularly exciting is the recent demonstration
`th~t binding of carbohydrates on the surface of leukocytes,
`\\'Jth a class of animal lectins designated 'selectins', controls
`
`3
`
`Table 1. Sorne glycosylated proteins of therapeutic interest. T his
`table is based largely on the review of Rasmussen [67].
`
`Glycoprotein
`
`Carbohy- Require- Biotech- Clinical
`drate-
`nology
`ment of
`use
`peptide
`carbohy-
`pro-
`linkage
`drate for duction
`activiry
`
`\
`\
`
`1
`
`\
`
`+
`:.t
`+
`
`+
`
`+
`
`+
`
`+
`+
`
`+
`
`+
`
`+
`+
`
`+
`
`+
`
`+
`
`+
`+
`
`+
`
`:.t
`
`+
`
`+
`
`:.t
`
`N and 0
`N
`
`0
`
`a,-Antitrypsi n
`N
`Coagulation factor VIII N and 0
`Erythropoietin
`N and 0
`Follicle stimulating
`hormone
`Glucocerebrosidase
`Granulocyte colony-
`stimul ating factor
`Granulocyte-macro-
`phage colony-
`stimulating factor
`Human chorionic
`gonadotropin
`Interleukin-2
`lnterferon-P
`Interferon-y
`Protein C
`Soluble CD4
`Tissue plasminogen
`activator
`
`N and 0
`
`N and 0
`0
`N
`N
`N
`N
`
`N
`
`leukocyte traffic by mediating adhesion of these cells to re(cid:173)
`stricted portions of the endothelium and their recruitment to
`inflammatory sites (63-65). Within a short period of time,
`the study of selectins and their receptors has become, per(cid:173)
`haps, the most active area in glycobiology. Intensive attempts
`are in progress to design carbohydrate-based selectin inhibi(cid:173)
`tors, which, in tum, may be candidates for a new class of
`anti-inflammatory drugs (66].
`This is one example of bow increased knowledge of car(cid:173)
`bohydrate structure and fonction might be utilized for thera(cid:173)
`peutic purposes. Another example is the enzymatic modifica(cid:173)
`tion of the glycan of the enzyme glucocerebrosidase (gluco(cid:173)
`sylcerarnidase), which is essential for its clinical use (under
`the tracte name Ceredase) in the treatment of patients with
`Gaucher' s disease [68, 69]. Tt is the first, and thus far prob(cid:173)
`ably the only, case of enzyme replacement therapy, a concept
`suggested some 30 years ago. Also, genetic engineering
`makes it possible to produce glycoproteins in heterologous
`systems on a large scale, both for research purposes and for
`therapeutic use (Table 1). We are indeed witnessing the emer(cid:173)
`gence of glycotechnology [70] , a branch of biotechnology
`that uses nove! approaches to manipulate carbohydrates or
`related materials, with the aim of creating new products or
`new procedures for the betterment of our lives. An impres(cid:173)
`sive example is erythropoietin, a circulating glycoprotein
`hormone that stimulates erythropoiesis, which has the dis(cid:173)
`tinction of being the first recombinant glycoprotein produced
`industrially for

This document is available on Docket Alarm but you must sign up to view it.


Or .

Accessing this document will incur an additional charge of $.

After purchase, you can access this document again without charge.

Accept $ Charge
throbber

Still Working On It

This document is taking longer than usual to download. This can happen if we need to contact the court directly to obtain the document and their servers are running slowly.

Give it another minute or two to complete, and then try the refresh button.

throbber

A few More Minutes ... Still Working

It can take up to 5 minutes for us to download a document if the court servers are running slowly.

Thank you for your continued patience.

This document could not be displayed.

We could not find this document within its docket. Please go back to the docket page and check the link. If that does not work, go back to the docket and refresh it to pull the newest information.

Your account does not support viewing this document.

You need a Paid Account to view this document. Click here to change your account type.

Your account does not support viewing this document.

Set your membership status to view this document.

With a Docket Alarm membership, you'll get a whole lot more, including:

  • Up-to-date information for this case.
  • Email alerts whenever there is an update.
  • Full text search for other cases.
  • Get email alerts whenever a new case matches your search.

Become a Member

One Moment Please

The filing “” is large (MB) and is being downloaded.

Please refresh this page in a few minutes to see if the filing has been downloaded. The filing will also be emailed to you when the download completes.

Your document is on its way!

If you do not receive the document in five minutes, contact support at support@docketalarm.com.

Sealed Document

We are unable to display this document, it may be under a court ordered seal.

If you have proper credentials to access the file, you may proceed directly to the court's system using your government issued username and password.


Access Government Site

We are redirecting you
to a mobile optimized page.





Document Unreadable or Corrupt

Refresh this Document
Go to the Docket

We are unable to display this document.

Refresh this Document
Go to the Docket