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`
`JOURNAL OF CLINICAL MICROBIOLOGY
`VOLUME 42 I JULY 2004 0 NUMBER 7
`
`Andrew B. Onderdonk, Editor in Chief (2009)
`C’"W””f~’ L"b0’“’0'7
`Carole A. Bolin, Editor (2009)
`V
`‘Michigan 511115’ U’”l'<’r5l0’
`Richard T- D’Aq““3v E07107 (2006)
`Vanderbilt University Medical Center
`Gary V_ Doem, Edna, (2009)
`University of Iowa llosyutals and Clinics
`
`Michael M. Dunne, Jr., Editor (2009)
`Washington Urziversity School of Medicine
`B,_~a(-illey w_ Fenwick’ Edi”), (2003)
`I/”l3””“ Tech
`Howard A. Fields’ Editor (2005)
`Centers for Diseave Control and Prevention
`
`Wendy M. Johnson, Editor (2007)
`Canseiie C'0IiI0/wion
`Geogfrey A_ Land’ Editor (2009)
`TlicMef/1odzstHospiial
`Stephen A. Moser, Editor (2009)
`U,,,'Vgm',~y 0fA[abama at 3,‘,-,m‘ng/mm
`Yi_wei Tang’ Ed,-,0, (3006)
`Vanderbilt University Medical Center
`
`*
`
`—
`
`EDITORIAL BOARD
`
`Anton P. Andonov (2006)
`Max Arens (2005)
`Jabcr Aslanzadeh (2005)
`William W. Barrow (2004)
`Bernard Beall (2004)
`Laurent Belec (2005)
`William H. Benjamin (2004)
`Kathryn Bernard (2006)
`Carolyn M. Black (2006)
`Patrick Boerlin (2004)
`Erik Boettger (2004)
`Paul Bourbean (2005)
`Mary E. Brandt (2006)
`Stephen M. Brecher (2005)
`Jens Bukh (2005)
`Felipe Cabello (2004)
`Richard Calderone (2004)
`Angela M. Caliendo (2004)
`Rafael Canton (2006)
`Jose Campione-Piecardo (2004)
`Elisabeth Carniel (2004)
`Karen C. Carroll (2004
`Jelfrey E. Christensen 2004)
`Clilford G. Clark (2005)
`Richard B. Clark (2004)
`Stuart C. Clarke (2006)
`Jill E. Clarridge (2006)
`Dennis J. Cleri (2005)
`Diana R. Cundell (2005)
`Erica M. D’Agata (2005)
`Mary C. Davis (2004)
`Mary L. Delaney (2006)
`Phyllis Della-Latta (2004)
`Daniel J. Diekema (2006)
`Frances P. Dovvnes (2004)
`Michel E. M. Drancourt (2005)
`Ilubert P. Endtz (2005)
`Mark C. Enright (2006)
`Dean Erdman (2004)
`Mark J. Espy (2004)
`Jerome Etienne (2005)
`Robert C. Fader (2006)
`
`Mark Feitelson (2006)
`Heinrich U. Feldmann (2006)
`Thomas A. Ficht (2006)
`Annette W. Fothergill (2006)
`Alvin Fox (2006)
`Guido Funke (2005)
`Thomas R. Fritsche (2006)
`Lynne S. Garcia (2005)
`Patricia Garrett (2005)
`Robert D. Garrison (2006)
`Mary J. George (2006)
`Frank Gibson (2005)
`Curt A. Gleavcs (2006)
`Henry P. Godfrey (2006)
`Swee Han Goh (2006)
`Irene Gonzalez (2006)
`Ann Gritfen (2004)
`Brigitte P. Grilfith (2005)
`Jetfrey K. Griffiths (2006)
`Peter A. Gross (2005)
`Phalguni Gupta (2004)
`Gerri Hall (2005)
`James L. Harris (2006)
`Kevin C. Hazen (2004)
`Klaus Hedman (2004)
`T. Hung (2006)
`Susan A. Howell (2006)
`Henry Hsu (2006)
`Johannes Huebner (2006)
`Wendy A. Hutchins (2006)
`Thomas J. Inzana (2004)
`Brad Jett (2004)
`Kai M. Kam (2005)
`Sue C. Kehl (2006)
`Yury E. Khudyakov (2006)
`Deanna Kiska (2004)
`Brent E. Korba (2006)
`Mel Krajden (2006)
`Vincent J. LaBombardi (2005)
`Davise H. Larone (2004)
`Brent A. Lasker (2004)
`Albert J. Lastovica (2005)
`
`Paul N. Levett (2005)
`Michael H. Levi (2004)
`Michael J. Loelfelholz (2005)
`Judith Lovchik (2005)
`Yvonne A. Lue (2006)
`C. R. Madcley (2005)
`Lawrence C. Madolf (2005)
`Eshwar Mahenthiralingam (2004)
`Carl F. Marrs (2006)
`Suzanne M. Matsui (2005)
`Alexander J. McAdam (2005)
`Dennis J. McCance (2005)
`Yvette S. McCarter (2005)
`M. Catherine McEllistren1 (2006)
`Xiang-Jin Mcng (2005)
`Chris Miller (2005)
`Ellen A. S. Moland (2005)
`Stephan S. Monroe (2004)
`Lucy M. Mutharia (2006)
`Irving Nachamkin (2004)
`Gopinath B. Nair (2004)
`Jim Newell (2004)
`Christopher W. Olsen (2006)
`Arvind A. Padhye (2004)
`Preeti K. Pancholi (2006)
`Lawrence C. Paoletti (2004)
`Christopher J. Papasian (2004)
`Jean B. Patel (2006)
`Pravin H. Patel (2006)
`Robin Patel (2004)
`Charles S. Pavia (2005)
`Ellena Peterson (2004)
`Lance Peterson (2005)
`Astrid K. Petrich (2006)
`Michael A. Pfaller (2006)
`David H. Pincus (2006)
`Tyrone L. Pitt (2006)
`Xnan Qin (2006)
`Rama Ramani (2004)
`Didicr Raoult (2004)
`Patricia S. Reichelderfer (2005)
`Andrew Reilly (2004)
`
`Jurgen A. Richt (2006)
`Sandra S. Richter (2006)
`William H. Riley (2005)
`Kathryn L. Ruotf (2006)
`Pekka I. A. Saikku (2004)
`Robert L. Sautter (2004)
`D. Scott Schinid (2006)
`Ira Schwartz (2005)
`David L. Sewell (2004)
`Daniel S. Shapiro (2005)
`Prem L. Sharma (2005)
`Virginia D. Shortridge (2005)
`Sanjay K. Shukla (2005)
`Thomas F. Smith (2006)
`Stephen A. Spector (2004)
`Alain C. Stinzi (2005)
`Charles W. Stratton (2005)
`Deanna A. Sutton (2005)
`Ella M. Swierknsz (2004)
`Sam R. Telford III (2006)
`Raymond Tellier (2005)
`Richard M. Thorn (2005)
`Graham Tipples (2006)
`Francesca Torriani (2005)
`Gregory J. Tyrrell (2006)
`Lucio Vera-Cabrera (2006)
`Elizabeth A. Wagar (2004
`Ken B. Waites (2005)
`Thomas J. Walsh (2004)
`Yun W. Wang (2006)
`Audrey Wanger (2005)
`David W. Warnock (2004)
`David F. Welch (2005)
`Robbin S. Weyant (2004)
`Susan Vfllittier (2004)
`Patricia P. Wilkins (2005)
`Marianna Wilson (2006)
`Patricia L. Winokur (2006)
`Frank G. Witebsky (2004)
`Donna M. Wolk (2006)
`Gail L. Woods (2004)
`Xiaotian Zheng (2005)
`
`-
`
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`
`Linda M. lllig, Director, Journals
`Samuel Kaplan, Chairman, PLtl7liL'LlIl(}nS Board
`Anastacia Thomasian, Production Editor
`
`The Journal of Clinical Microbiology (ISSN 0095-1137), a publication of the American Society for Microbiology (ASM), 1752 N St., NW, Washington, DC
`20036-2904,
`is devoted to the dissemination of new knowledge concerning the applied microbiological aspects of human and animal
`infections and infestations,
`particularly regarding their etiologic agents, diagnosis, and epidemiology. Papers dealing with antibiotics and antimicrobial agents and chemotherapy, with fundamental
`aspects of infection and immunity, and with food or dairy microbiology fall within the scope of other ASM publications. Instructions to authors are published in the
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`relating to disposition of submitted manuscripts, proofs, and general editorial matters should be directed to the Journals Department, American Society for
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`Made in the United States of America. Printed on acid—free paper.
`D01: 10.1128/.lC.Vl.42.7.2004
`CODEN: JCMIDW
`Copyright © 2004. American Society for Microbiology. All Rights Reserved.
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`
`CFAD V. Anacor, |PR201 5-01776 ANACOR EX. 2084 - 2/1 3
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`CFAD v. Anacor, IPR2015-01776 ANACOR EX. 2084 - 2/13
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`

`
`JOURNAL OF CLINICAL MICROBIOLOGY
`
`Volume 42
`
`July 2004
`
`MIN IREVI EW
`
`Rapid Detection of Antimicrobial-Resistant Organism
`Carriage: an Unmet Clinical Need
`
`Daniel J. Diekema, Kirsty J.
`Dodgson, Bryndis Sigurdardottir,
`and Michael A. Pfaller
`
`2879-2883
`
`BACTERIOLOGY
`
`Bacteremia in an Immunocompromised Patient Caused
`by a Commensal Neisseria meningitidis Strain Harboring
`the Capsule Null Locus (cnl)
`
`Molecular Characterization of Extended-Spectrum Beta-
`Lactamases Produced by Clinical Isolates of Klebsiella
`pneumoniae and Escherichia coli from a Korean Nationwide
`Survey
`
`Prospective Study of a Real-Time PCR That Is Highly
`Sensitive, Specific, and Clinically Useful for Diagnosis
`of Meningococcal Disease in Children
`
`Molecular Typing of Neisseria gonorrhoeae Isolates by
`Pyrosequencing of Highly Polymorphic Segments of the porB
`Gene
`
`Isolation of Recombinant Antibodies against EspA and
`Intimin of Escherichia coli O157:H7
`
`Use of Robotized DNA Isolation and Real-Time PCR To
`Quantity and Identify Close Correlation between Levels of
`Neisseria meningitidis DNA and Lipopolysaccharides in
`Plasma and Cerebrospinal Fluid from Patients with
`Systemic Meningococcal Disease
`
`Ulrich Vogel, Heike Claus, Lutz Von
`Miiller, Donald Bunjes, Johannes
`Elias, and Matthias Frosch
`
`Seok Hoon Jeong, Il Kwon Bae,
`Jung Hun Lee, Seung Ghyu Sohn,
`Geun Ho Kang, Ghil Ja J eon,
`Young Ho Kim, Byeong Chul
`Jeong, and Sang Hee Lee
`
`Penelope A. Bryant, Hua Yi Li,
`Angelo Zaia, Julia Griffith, Geoff
`I-logg, Nigel Curtis, and Jonathan R.
`Carapetis
`
`Magnus Unemo, Per Olcén, Jon
`Jonasson, and Hans Fredlund
`
`Sarah A. Kiihnc, William S. Hawes,
`Roberto M. La Ragione, Martin J.
`Woodward, Garry C. Whitelam, and
`Kevin C. Gough
`
`Reidun Qvstebo, Petter Brandtzaeg,
`Berit Brusletto, Kari Bente Foss
`Hang, Knut Lande, Ernst Arne
`I-Ioiby, and Peter Kierulf
`
`Molecular Analysis of the Microflora Associated with Dental
`Caries
`
`M. A. Munson, A. Banerjee, T. F.
`Watson, and W. G. Wade
`
`2898-2901
`
`2902-2906
`
`2919-2925
`
`2926-2934
`
`2966-2976
`'
`
`2980-2987
`
`3023—3029
`
`3052-3058
`
`3065—3072
`
`Studies on the Involvement of the Exopolysaccharide
`Produced by Cystic Fibrosis-Associated Isolates of the
`Burkholderia cepacia Complex in Biofilm Formation and
`in Persistence of Respiratory Infections
`
`Prevalence of the hifBC, hmw1A, hmw2A, hmwC, and hia
`Genes in Haemophilus irifluenzae Isolates
`
`Use of In Vivo-Generated Biofilms from Hemodialysis
`Catheters To Test the Elficacy of a Novel Antimicrobial
`Catheter Lock for Biofilm Eradication In Vitro
`
`Comparison of the APTIMA CT and GC Assays with the
`APTIMA Combo 2 Assay, the Abbott LCX Assay, and Direct
`Fluorescent-Antibody and Culture Assays for Detection of
`Chlamydia trachomatis and Neisseria gonorrhoeae
`
`Monica V. CL1nha, Silvia A. Sousa,
`Jorge H. Lcitao, Leonilde M.
`Morcira, Paula A. Videira, and
`Isabel Sa-Correia
`
`I. Zafer Ecevit, Kirk W. McCrea,
`Melinda M. Pettigrew, Ananda Sen,
`Carl F. Marrs, and Janet R.
`Gilsdorf
`
`P. Kite, K. Eastwood, S. Sugden,
`and S. L. Percival
`
`B. Boyadzhyan, T. Yashina, J. H.
`Yatabe, M. Patnaik, and C. S. Hill
`
`3089-3093
`
`CFAD V. Anacor, |PR201 5-01 776 ANACOR EX. 2084 - 3/1 3
`
`Continued on following page
`
`CFAD v. Anacor, IPR2015-01776 ANACOR EX. 2084 - 3/13
`
`

`
`Contirmcd from preceding page
`
`Endemic, Epidemic Clone of Salmonella enterica Serovar
`Typhi Harboring a Single Multidrug-Resistant Plasmid
`in Vietnam between 1995 and 2002
`
`Quantitative Analysis of Diverse Lactobacillus Species
`Present in Advanced Dental Caries
`
`Evaluation of the Hyplex BloodScreen Multiplex PCR—
`Enzyme-Linked Immunosorbent Assay System for Direct
`Identification of Gram-Positive Cocci and Gram-Negative
`Bacilli from Positive Blood Cultures
`
`Multiplex Real~Time PCR for Detection of Anaplasma
`phagocytophilum and Borrelia burgdorferi
`
`Use of Swabs without Transport Media for the Gen-Probe
`Group A Strep Direct Test
`
`Use of Applied Biosystems 790OHT Sequence Detection
`System and Taqman Assay for Detection of Quinolone-
`Resistant Neisseria gonorrhoeae
`
`Detailed Protocol for Purification of Chlamydia pncumoniae
`Elementary Bodies
`
`Performance of the MagNA Pure LC Robot for Extraction of
`Chlamydia trachomatis and Neisseria gonorrhoeae DNA from
`Urine and Swab Specimens
`
`Phenotypic and Molecular Characterization of Erythromycin
`Resistance in Four Isolates of Streptococcus-Like Gram-
`Positive Cocci Causing Bacteremia
`
`A Novel Multiplex Real-Time PCR Assay for Rapid Typing
`of Major Staphylococcal Cassette Chromosome mec
`Elements
`
`Genetic Relatedness and Quinolone Resistance of
`Campylobacterjejuni Strains Isolated in 2002 in Hong Kong
`
`Epidemiological Investigation of Bloodstream Infections by
`Extended-Spectrum Cephalosporin-Resistant Escherichia coli
`in a Taiwanese Teaching Hospital
`
`Diagnostic Utility and Clinical Significance of Naso- and
`Oropharyngeal Samples Used in a PCR Assay To Diagnose
`Mycoplasma pneumoniae Infection in Children with
`Community-Acquired Pneumonia
`
`Dilferenccs in Clinical Manifestation of Streptococcus
`pneumoniae Infection Are Not Correlated with In Vitro
`Production and Release of the Virulence Factors
`Pneumolysin and Lipoteichoic and Teichoic Acids
`
`Evaluation of Indirect Fluorescence Antibody Assay for
`Detection of Bartonella clarridgeiae and Seroprevalence of
`B. clarridgeiae among Patients with Suspected Cat Scratch
`Disease
`
`Clinical and Microbiological Analysis of Bloodstream
`Infections Caused by Chryseobactcrium mcningosepticum
`in Nonneonatal Patients
`
`Thi Anh Hong Le, Monique Lejay-
`Collin, Patrick A. D. Grimont, Thuy
`Long Hoang, Thi Vinh Nguyen,
`Francine Grimont, and Maurice R.
`Scavizzi
`
`Roy Byun, Mangala A. Nadkarni,
`Kim-Ly Chhour, F. Elizabeth
`Martin, Nicholas A. Jacques, and
`Neil Hunter
`
`Nele Wellinghausen, Beate Wirths,
`Andreas Essig, and Lars Wassill
`
`Joshua W. Courtney, Leah M.
`Kostelnik, Nordin S. Zeidner, and
`Robert F. Massung
`Paul P. Bourbeau and Barbara J.
`Heiter
`
`Julie Giles, Justin Hardick, Jeffrey
`Yuenger, Michael Dan, Karl Reich,
`and Jonathan Zenilman
`
`Sanghamitra Mukhopadhyay,
`Alejandra P. Clark, Erin D.
`Sullivan, Richard D. Miller, and
`James T. Summcrsgill
`
`Nicholas Dalesio, Vince Marsiglia,
`Andrew Quinn, Thomas C. Quinn,
`and Charlotte A. Gaydos
`Patrick C. Y. Woo, Amanda P. C.
`To, Susanna K. P. Lau, Ami M. Y.
`Fung, and Kwok-yung Yuen
`Patrice Francois, Gesuele Renzi,
`Didier Pittet, Manuela Bento,
`Daniel Lew, Stephan Harbarth,
`Pierre Vaudaux, and Jacques
`Schrenzel
`
`Yiu-Wai Chu, Man-Yu Chu, Kit-
`Yee Luey, Yin—Wa Ngan, Ka-Lok
`Tsang, and Kai-Man Kam
`
`Jing-Jou Yan, Wen-Chien Ko,
`Jiunn-long Wu, Shu-Huei Tsai, and
`Chin-Luan Chuang
`Ian C. Michelow, Kurt Olsen,
`Juanita Lozano, Lynn B. Dulfy,
`George H. McCracken, and R.
`Doug Hardy
`
`Annette Spreer, Astrid Lis, Joachim
`Gerber, Ralf René Reincrt, Helmut
`Eiffert, and Roland Nau
`
`Hidehiro Tsuneoka. Akiko Umeda,
`Masato Tsukahara, and Kohsuke
`Sasaki
`
`Pen—Yi Lin, Chishih Chu, Lin-Hui
`Su, Chung—Tsui Iluang, Wen—Ya
`Chang, and Cheng-Ilsun Chiu
`
`3094-3099
`
`3147-3152
`
`3164-3168
`
`3207-3211
`
`3281-3283
`
`3288-3290
`
`3300-3302
`
`3303-3305
`
`3309-3312
`
`3321-3323
`
`3329-3332
`
`3339-3341
`
`3342-3345
`
`3346-3349
`
`3353-3355
`
`Continued on following page
`
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`CFAD v. Anacor, IPR2015-01776 ANACOR EX. 2084 - 4/13
`
`

`
`Crmtirmed from preceding page
`
`Quality Control Guidelines for BAL9141 (R0 63-9141), an
`Investigational Cephalosporin, When Reference MIC and
`Standardized Disk Dilfusiou Susceptibility Test Methods
`Are Used
`
`T. R. Anderegg, R. N. Jones, H. S.
`Sader, and the Quality Control
`Working Group
`
`CHLAMYDIOLOGY AND RICKETTSIOLOGY
`
`Combination of PCR Targeting the VD2 of amp] and
`Reverse Line Blot Analysis for Typing of Urogenital
`Chlamydia trachamatis Serovars in Cervical Scrape
`Specimens
`
`Comparison of Three Nucleic Acid Amplification Tests for
`Detection of Chlamydia trachomatis in Urine Specimens
`
`Immunohistostaining Assays for Detection of Chlamydia
`pneumoniae in Atherosclerotic Arteries Indicate Cross-
`Reactions with Nonchlamydial Plaque Constituents
`
`MYCOBACTERIOLOGY AND AEROBIC
`ACTINOMYC ETES
`
`High-Throughput Method for Detecting Genomic-Deletion
`Polymorphisms
`
`Molecular Epidemiology of Tuberculosis among Immigrants
`in Hamburg, Germany
`
`Assessment of Partial Sequencing of the 65-Kilodalton Heat
`Shock Protein Gene (hsp65) for Routine Identification of
`Mycobacterium Species Isolated from Clinical Sources
`
`Improved Sensitivity of Nucleic Acid Amplification‘ for Rapid
`Diagnosis of Tuberculous Meningitis
`
`Comparative Evaluation of the New Version of the INNO-
`LiPA Mycobacteria and GenoType Mycobacterium Assays
`for Identification of Mycobacterium Species from MB/BacT
`Liquid Cultures Artificially Inoculated with Mycobacterial
`Strains
`
`Antigenic Evidence of Prevalence and Diversity
`of Mycobacterium tuberculosis Arabinomannan
`
`2935-2939
`
`304] -3045
`
`3219-3224
`
`2913-2918
`
`2952-2960
`
`3000-3011
`
`3036-3040
`
`3083-3088
`
`3225-3231
`
`Monica Molano, Chris J. L. M.
`Meijer, Servaas A. Morré, Rene
`Pol, and Adriaan J. C. van den
`Brule
`
`Charlotte A. Gaydos, Mellisa
`Theodore, Nicholas Dalesio, Billie
`Jo Wood, and Thomas C. Quinn
`
`Vicky Y. Hoymans, Johan M.
`Bosmans, Dominique Ursi, Wim
`Martinet, Floris L. Wuyts, Eric Van
`Marck, Martin Altwegg, Christiaan
`J. Vrints, and Margareta M. Ieven
`
`Yves-Olivier Luc Goguet de la
`Salmoniere, C. C. Kim, A. G.
`Tsolaki, A. S. Pym, M. S. Siegrist,
`and Peter M. Small
`
`Roland Die], Sabine Ri'1sch—Gerdes,
`and Stefan Niemann
`
`Alan MCNabb, Diane Eisler, Kathy
`Adie, Marie Amos, Mabel
`Rodrigues, Gwen Stephens, William
`A. Black, and Judith Isaac-Rcnton
`
`Tsik Somuncu Johansen, Bettina
`Lundgren, Fehmi Tabak, Bjorn
`Petrini, Salih Hosoglu, Nese
`Saltoglu, and Vibeke Qstergaard
`Thornsen
`
`Eduardo Padilla, Victoria Gonzalez,
`Jose Maria Manterola, Andres
`Perez, Maria Dolorcs Quesada,
`Sergio Gordillo, Cristina Vilaplana,
`Maria Angelcs Pallarés, Sonia
`Molinos, Maria Dolores Sanchez,
`and Vicente Ausina
`
`Aharona Glatman-Freedman,
`Arturo Casadevall, Zongdong Dai,
`William R. Jacobs, Jr., Anping Li,
`Sheldon L. Morris, Josepinc» Anne
`D. Navoa, Sajida Piperdi, John B.
`Robbins, Rachel Schnccrson, J.
`Reid Schwebach, and Michael
`Shapiro
`
`CFAD V. Anacor, |PR201 5-01 776 ANACOR EX. 2084 - 5/1 3
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`Continued on _/'0//owing page
`
`CFAD v. Anacor, IPR2015-01776 ANACOR EX. 2084 - 5/13
`
`

`
`Continued from preceding page
`
`Molecular Genotyping of a Large, Multicentric Collection
`of Tubercle Bacilli Indicates Geographical Partitioning of
`Strain Variation and Has Implications for Global
`Epidemiology of Mycobacterium tuberculosis
`
`High Genetic Diversity Revealed by Variable-Number
`Tandem Repeat Genotyping and Analysis of hsp65 Gene
`Polymorphism in a Large Collection of “Mycobacterium
`canettii” Strains Indicates that the M. tuberculosis Complex
`Is a Recently Emerged Clone of “M. canettii”
`
`LightCycler-Based Dilferentiation of Mycobacterium abscessus
`and Mycobacterium chelonae
`
`Application of Oxidation-Reduction Assay for Monitoring
`Treatment of Patients with Pulmonary Tuberculosis
`
`Direct Identification of Mycobacterium haemophilum in Skin
`Lesions of Immunocompromised Patients by PCR-
`Restriction Endonuclease Analysis
`
`MYCOLOGY
`
`Intra- and Interlaboratory Study of a Method for Testing
`the Antifungal Susceptibilities of Dermatophytes
`
`Further Standardization of Broth Microdilution
`Methodology for In Vitro Susceptibility Testing of
`Caspofungin against Candida Species by Use of an
`International Collection of More than 3,000 Clinical Isolates
`Cross-Resistance between Fluconazole and Ravuconazole
`and the Use of Fluconazole as a Surrogate Marker To
`Predict Susceptibility and Resistance to Ravuconazole
`among 12,796 Clinical Isolates of Candida spp.
`
`Geographic Variation in the Susceptibilities of Invasive
`Isolates of Candida glabrata to Seven Systemically Active
`Antifungal Agents: a Global Assessment from the ARTEMIS
`Antifungal Surveillance Program Conducted in 2001 and
`2002
`
`Comparison of Different Methods of Isolation of DNA
`of Commonly Encountered Candida Species and Its
`Quantitation by Using a Real-Time PCR-Based Assay
`
`Cloning and Characterization of Trichophyton rubrum Genes
`Encoding Actin, Tri r2, and Tri r4
`
`Detection of Pneumocystis jiroveci in Respiratory Specimens
`by Four Staining Methods
`
`Niyaz Ahmed, Mahfooz Alam,
`K. Rajender Rao, Farhana Kauscr,
`N. Ashok Kumar, Nazia N. Qazi,
`Vartul Sangal, V. D. Sharma, Ram
`Das. V. M. Katoch, K. J. R. Murthy,
`Sujai Suneetha, S. K. Sharma,
`Leonardo A. Sechi, Robert H.
`Gilman, and Seyed E. Hasnain
`
`Michel Fabrc, Jean-Louis Koeck,
`Philippe Le Flechc, Fabrice Simon,
`Vincent Herve, Gillcs Vergnaud,
`and Christine Pourccl
`
`L. Sedlacek, M. Rifai, K. Feldmann,
`and F. C. Bange
`Parissa Farnia, Foroazan
`Mohammadi, Mehdi Mirsacdi,
`Abolhasan Zia Zarife, Javad
`Tabatabee, Katayoon Bahadori,
`Muslem Bahadori, Mohammad
`Reza Masjedi, and Ali Akbar
`Velayati
`
`S. X. Wang, L. H. Sng, H. N.
`Leong, and B. H. Tan
`
`M. A. Ghannoum, V. Chaturvedi,
`A. Espinel-Ingroif, M. A. Pfaller,
`M. G. Rinaldi, W. Lee-Yang, and
`D. W. Warnock
`
`M. A. Pfaller. S. A. Messer, L.
`Boyken, C. Rice, S. Tendolkar, R. J.
`Hollis, and D. J. Diekema
`
`M. A. Pfaller, S. A. Messer, L.
`Boyken, C. Rice, S. Tendolkar, R. J.
`Hollis, and D. J. Diekema
`
`M. A. Pfaller, S. A. Messer, L.
`Boykcn, S. Tendolkar, R. J. Hollis,
`and D. J. Dickcma
`
`Younes Maaroufi, Naima Ahariz,
`Mireille Husson, and Francoise
`Crokaert
`
`3240-3247
`
`3248-3255
`
`3284-3287
`
`3336-3338
`
`2977-2979
`
`3117-3119
`
`3137-3141
`
`3142-3146
`
`3159-3163
`
`Jimin Gao and Akira Takashima
`
`3298-3299
`
`G. W. Procop, S. Haddad, J. Quinn,
`M. L. Wilson, N. G. Hcnshaw, L. B.
`Reller, R. L. Artymyshyn, M. T.
`Katanik, and M. P. Wcinstein
`
`3333-3335
`
`Continued on following page
`
`CFAD V. Anacor, |PR201 5-01 776 ANACOR EX. 2084 - 6/1 3
`
`CFAD v. Anacor, IPR2015-01776 ANACOR EX. 2084 - 6/13
`
`

`
`Continued from preceding page
`
`PARASITOLOGY
`
`Performance of a New, Rapid Assay for Detection
`of Trichomonas vaginalis
`
`Risk Factors for Sporadic Cryptosporidiosis among
`Immunocompetent Persons in the United States from 1999
`to 2001
`
`Purification of Enterocytozoon bieneusi Spores from Stool
`Specimens by Gradient and Cell Sorting Techniques
`
`Detection and Genotyping of Entamoeba histolytica,
`Entamaeba dispar, Giardia lamblia, and Cryptosporidium
`parvum by Oligonucleotide Microarray
`Real-Time PCR Assay for Detection and Genotype
`Dilferentiation of Giardia lamblia in Stool Specimens
`
`Use of Two Sensitive and Specific Immunoblot Markers,
`Em70 and Em90, for Diagnosis of Alveolar Echinococcosis
`
`VIROLOGY
`
`Detection of Severe Acute Respiratory Syndrome (SARS)
`Coronavirus Nucleocapsid Protein in SARS Patients by
`Enzyme-Linked Immunosorbent Assay
`
`Detection of Human Immunodeficiency Virus Type 1
`Antiretroviral Resistance Mutations by High-Density DNA
`Probe Arrays
`
`Performance of Commercially Available Enzyme
`Immunoassays for Detection of Antibodies against Herpes
`Simplex Virus Type 2 in African Populations
`
`Coexistence of Multiple Genotypes, Including Newly
`Identified Genotypes, in Outbreaks of Gastroenteritis Due
`to Norovirus in Japan
`
`Evaluation of the Binax NOW, BD Directigen, and BD
`Directigen EZ Assays for Detection of Respiratory Syncytial
`Virus
`
`Ann Kurth, William L. H.
`Whittington, Matthew R. Golden,
`Katherine K. Thomas, King K.
`Holmes, and Jane R. Schwebke
`
`Sharon L. Roy, Stephanie M.
`DeLong, Sara A. Stenzcl,
`Beletshachew Shiferaw, Jacquelin
`M. Roberts, Asheena Khalakdina,
`Ruthanne Marcus, Suzanne D.
`Segler, Dipti D. Shah, Stephanie
`Thomas, Due J. Vugia, Shelley M.
`Zansky, Vance Dietz, Michael J.
`Beach, and the Emerging Infectious
`Program FoodNet Working Group
`Zuzana Kucerova, Hercules Moura,
`Gordon J. Leiteh, Rama Srirarn,
`Caryn Bern, Vivian Kawai, Daniel
`Vargas, Robert H. Gilman, Eduardo
`Ticona. Aldo Vivar, and Govinda S.
`Visvesvara
`
`Zheng Wang, Gary J. Vora, and
`David A. Stenger
`
`Rebecca A. Guy, Chongxie Xiao,
`and Paul A. Horgen
`
`Metin Korkmaz, Tonay Inceboz,
`Fehmi Celebi, Aylin Babaoglu, and
`Ahmet Uner
`
`Susanna K. P. Lau, Patrick C. Y.
`Woo, Beatrice H. L. Wong, Hoi-
`Wah Tsoi, Gibson K. S. Woo,
`Rosana W. S. Poon, Kwok-Hung
`Chan, William I. Wei, J. S. Malik
`Peiris, and Kwok-Yung Yuen
`
`R. Gonzalez, B. Masquelier,
`H. Fleury, B. Laeroix, A. Troesch,
`G. Vernet, and J. N. Telles
`
`Eddy Van Dyck, Anne Buvé, Helen
`A. Weiss, Judith R. Glynn, David
`W. G. Brown, Bénédicte De Deken,
`John Parry, and Richard J. Hayes
`
`Tsutomu Kageyama, Michiyo
`Shinohara, Kazue Uchida, Shuetsu
`Fukushi, Fuminori B. Hoshino,
`Shigeyuki Kojima, Reiko Takai,
`Tomoichiro Oka, Naokazu Takeda,
`and Kazuhiko Katayama
`
`Marilyn J. Ohm-Smith, Patricia S.
`Nassos, and Barbara L. Haller
`
`2940-2943
`
`2944-295 1
`
`3256-3261
`
`3262-3271
`
`3317-3320
`
`3350-3352
`
`2884-2889
`
`2907-2912
`
`2961-2965
`
`2988-2995
`
`2996-2999
`
`CFAD V. Anacor, |PR201 5-01 776 ANACOR EX. 2084 - 7/1 3
`
`Continued on following page
`
`CFAD v. Anacor, IPR2015-01776 ANACOR EX. 2084 - 7/13
`
`

`
`Cnntiriued ‘om recedinr an e
`.51 8
`
`Dissociation of Serum and Liver Hepatitis C Virus RNA
`Levels in Patients Coinfected with Human
`Immunodeficiency Virus and Treated with Antirctroviral
`Drugs
`
`Measles Virus Genotyping by Nucleotide-Specific Multiplex
`PCR
`
`High Prevalence of Hepatitis C Virus Type 5 in Central
`France Evidenced by a Prospective Study from 1996 to 2002
`
`Highly Sensitive Assay for Detection of Enterovirus in
`Clinical Specimens by Reverse Transcription-PCR with
`an Armored RNA I11ternal Control
`
`Simultaneous Runs of the Bayer VERSANT HIV-I Version
`3.0 and HCV bDNA Version 3.0 Quantitative Assays on the
`System 340 Platform Provide Reliable Quantitation and
`Improved Work Flow
`
`Detection and Typing of Human Papillomavirus by E6
`Nested Multiplex PCR
`
`Comparison of Three Commercially Available Serologic
`Assays Used To Detect Human Parvovirus B19-Specific
`Immunoglobulin M (IgM) and IgG Antibodies in Sera of
`Pregnant Women
`
`Discovery of Novel Human and Animal Cells Infected by
`the Severe Acute Respiratory Syndrome Coronavirus
`by Replication-Specific Multiplex Reverse Transcription-
`PCR
`
`Amplicon Sequencing and Improved Detection of Human
`Rhinovirus in Respiratory Samples
`
`Use of Oligonucleotide Microarrays for Rapid Detection and
`Serotming of Acute Respiratory Disease-Associated
`Adenoviruses
`
`Development and Clinical Evaluation of a Highly Sensitive
`DNA Microarray for Detection and Genotyping of Human
`Papillomaviruses
`
`Identification of the Severe Acute Respiratory Syndrome
`Coronavirus by Simultaneous Multigene DNA Sequencing
`
`Influenza B Virus Victoria Group with a New Glycosylation
`Site Was Epidemic in Japan in the 2002-2003 Season
`
`Genotypic Profile of Human Herpesvirus 8 (Kaposi’s
`Sarcoma-Associated Herpesvirus) in Urine
`
`Milena Furione, Renato Maserati,
`Marta Gatti, Fausto Baldanti,
`Agostino Cividini, Raflaele Bruno,
`Giuseppe Gerna, and Mario U.
`Mondelli
`»
`
`Jacques R. Krcrncr, Fred Fack,
`Christophe M. Olinger, Mick N.
`Mulders, Claude P. Muller
`
`Cécile Henquell, Carole Cartau,
`Armand Abergel, Henri
`Laurichesse, Christel Regagnon,
`Christophe De Champs, Jean-Luc
`Bailly, and Helene Peigue-Lafeuille
`
`Marcel Beld, René Minnaar, Jan
`Weel, Cees Sol, Marjolein Damen,
`Harry Van der Avoort, Paulinc
`Wcrtheim-van Diilen, Alex van
`Breda, and Rene Boom
`
`Tarek Elbeik, Norman Markowitz,
`Patricia Nassos, Uday Kumar, Scott
`Beringer, Barbara Hallcr, and
`Valerie Ng
`
`K. Sotlar, D. Diemer, A. Dethlefls,
`Y. Hack, A. Stubner, N. Vollmer,
`S. Menton, M. Menton, K. Dietz,
`D. Wallwiener, R. Kandolf, and
`B. Bijltmann
`
`3012-3016 I
`
`3017-3022
`
`3030-3035
`
`3059-3064
`
`3120-3127
`
`3176-3184
`
`Allyson R. Butchko and Jeanne A.
`Jordan
`
`3191-3195
`
`3196-3206
`
`3212-3218
`
`3232-3239
`
`3272-3280
`
`3291-3294
`
`3295-3297
`
`Laura Gillim-Ross, Jill Taylor,
`David R. Scholl, Jared Ridenour,
`Paul S. Masters, and David E.
`Wcntworth
`
`Christelle Deffcrnez, Werner
`Wunderli, Yves Thomas, Sabine
`Yerly, Luc Perrin, and Laurent
`Kaiser
`
`Baochuan Lin, Gary J. Vora, Dzung
`Thach, Elizabeth Walter, David
`Metzgar, Clark Tibbetts, and David
`A. Stengcr
`
`TaeJeong Oh, ChangJin Kim,
`SukKyung Woo, TaeScung Kim,
`DongJun Jeong, MyungSoon Kim,
`Sunwoo Lee, HyunSi1l Cho, and
`Sungwhan An
`
`T. Vinayagamoorthy, Kirk Mulatz.
`and Roger Hodkinson
`
`Naoko Nakagawa, Ritsuko Kubota,
`Akiko Maeda. and Yoshinobu
`Okuno
`
`M. M. Beyari, T. A. Hodgson, W.
`Kondowe, E. M. Molyneux, C. M.
`Scully, S. R. Porter, and C. G. Teo
`
`Evaluation of a Real-Time PCR Assay Using the LightCycler
`System for Detection of Parvovirus B19 DNA
`
`Richard S. Buller and Gregory
`Storch
`
`3326-3328
`
`Continued on following page
`
`CFAD V. Anacor, |PR201 5-01 776 ANACOR EX. 2084 - 8/1 3
`
`CFAD v. Anacor, IPR2015-01776 ANACOR EX. 2084 - 8/13
`
`

`
`Continued from preceding page
`
`CLINICAL VETERINARY MICROBIOLOGY
`
`Molecular and Ultrastructural Characterization of Porcine
`Hippurate-Negative Brachyspira pilosicoli
`
`Multiplex PCR Assay for Detection of Streptococcus suis
`Species and Serotypes 2 and 1/2 in Tonsils of Live and Dead
`Pigs
`
`EPIDEMIOLOGY
`
`Reference System for Characterization of Bordetella pertussis
`Pulsed-Field Gel Electrophoresis Profiles
`
`Molecular Epidemiology of Mycobacterium tuberculosis
`in Western Sweden
`
`Widespread Dissemination in The Netherlands of the
`Epidemic Berlin Methicillin-Resistant Staphylococcus aureus
`Clone with Low-Level Resistance to Oxacillin
`
`Clonal Relatedness of Enterotoxigenic Escherichia coli
`Strains Isolated from a Cohort of Young Children in
`Guinea-Bissau
`
`Molecular Epidemiology of Serratia marcescens in Two
`Hospitals in Danzig, Poland, over a 5-Year Period
`
`Diversity among Community Isolates of Methicillin-
`Resistant Staphylococcus aureus in Australia
`
`Serotypes and Genotypes of Erythromycin-Resistant Group
`B Streptococci in Korea
`
`Extended-Spectrum-B-Lactamase (TEM-52)-Producing
`Strains of Salmonella enterica of Various Serotypes Isolated
`in France
`
`CASE REPORTS
`
`Fungemia Caused by Zygoascus hellenicus in an Allogeneic
`Stem Cell Transplant Recipient
`
`First Comprehensively Documented Case of Paracoccus yeei
`Infection in a Human
`
`Septic Arthritis of the Knee Due to Fusobacterium
`necrophorum
`Prosthetic Mitral Valve Endocarditis Due to Ochrobactrum
`anthropi: Case Report
`
`Marja Fossi, Tarja Pohjanvirta,
`Antti Sukura, Sirpa Heinikainen,
`Rikke Lindecrona, and Sinikka
`Pelkonen
`
`C. Marois, S. Bougcard, M.
`Gottschalk, and M. Kobisch
`
`Abdolreza Advani, Declan
`Donnelly, and Hans Hallander
`
`Karine Brudey, Max Gordon, Peter
`Mostrom, Lisclott Svensson, Bodil
`Jonsson, Christophe Sola, Malin
`Ridell, and Nalin Rastogi
`
`W. J. B. Wannet, E. Spalburg,
`M. E. O. C. Heck, G. N. Pluister,
`R. J. L. Willems, and
`A. J. de Neeling
`
`Hans Steinsland, Palle Valentiner-
`Branth, Peter Aaby, Kare Molbak,
`and Halvor Sommerfelt
`
`Lukasz Naumiuk, Anna Baraniak,
`Marek Gniadkowski, Beata
`Krawczyk, Bartosz Rybak, Ewa
`Sadowy, Alfred Samet, and Jozef
`Kur
`
`F. G. O’l3rie11, T. T. Lim, F. N.
`Chong, G. W. Coombs, M. C.
`Enright, D. A. Robinson, A. Monk,
`B. Said-Salim, B. N. Kreiswirth, and
`W. B. Grubb
`
`Young Uh, In Ho Jang, Gyu Yel
`Hwang, Mi Kyung Lee, Kap Jun
`Yoon, and Hyo Youl Kim
`
`Frangois—Xavier Weill, Marie
`Demartin, Laetitia Fabre, and
`Patrick A. D. Grimont
`
`Mary E. Brandt, Carol A. Kauffman,
`Peter G. Pappas, Naureen Iqbal,
`Beth A. Arthington-Skaggs, Wendy
`Lee-Yang, and Mandy T. Smith
`Guido Fnnke, Reinhard Frodl, and
`Hartmut Sommer
`
`Paresh D. Sonsale, Mark R.
`Philipson, and Jilean Bowskill
`M. P. Romero Gomez, A. M.
`Peinado Esteban, J. A. Sobrino
`Daza, J. A. Séez Nieto, D. Alvarez,
`and P. Pena Garcia
`
`3153-3158
`
`31 69-3175
`
`2890-2897
`
`3046-3051
`
`3077-3082
`
`3100-3107
`
`3108-3116
`
`3185-3190
`
`3306-3308
`
`3359-3362
`
`3363-3365
`
`3366-3368
`
`3369-3370
`
`3371-3373
`
`CFAD V. Anacor, |PR201 5-01 776 ANACOR EX. 2084 - 9/1 3
`
`Continued on following page
`
`CFAD v. Anacor, IPR2015-01776 ANACOR EX. 2084 - 9/13
`
`

`
`Continued from preceding page
`
`Bacteriology of a Bear Bite Wound to a Human: Case
`Report
`
`Dennis Kunimoto, Robert Rennie,
`Diane M. Citron, and Ellie J. C.
`Goldstein
`
`3374-3376
`
`LETTERS TO THE EDITOR
`
`Legionella pneumophila Serogroup 1 Antigen Can Be
`Detected in Sputum Samples by an
`Immunochromatographic Assay
`
`Kristoifer Stralin, lngegerd
`Alriksson, and Eva Tornqvist
`
`Human Tracheopulmonary Myiasis
`
`Robert D. Garrison
`
`Internal Amplification Control for PCR Should Not Be
`Mandatory in the Clinical Medical Environment
`
`Letter: Timothy Barkham.
`Reply: Jeffrey Hoorfar
`
`3378
`
`3379-3380
`
`Coverphotograph (Copyright © 2004, American Society for Microbiology. All Rights Reserved.): The organism shown was isolated
`from the blood of a 66-year-old man with a long histor