throbber
(12) Unlted States Patent
`Buggy et a].
`
`(10) Patent N0.:
`(45) Date of Patent:
`
`US 8,754,090 B2
`*Jun. 17, 2014
`
`USOO8754090B2
`
`(54) USE OF INHIBITORS OF BRUTON’S
`TYROSINE KINASE (BTK)
`
`_
`.
`.
`(75) Inventors. Joseph J. Buggy, Mountaln YleW, CA
`(Us); Gwen Fyfe, San FranCISco, CA
`(US); David J. Loury, San Jose, CA
`(Us)
`
`(73) Assignee: Pharmacyclics, Inc., Sunnyvale, CA
`(Us)
`
`( * ) Notice:
`
`Subject to any disclaimer, the term of this
`patent is extended or adjusted under 35
`U30 1540’) by 0 days'
`This patent is subject to a terminal dis
`Clalmer'
`
`~
`
`(21) Appl- NO-I 13/3401522
`
`(22) Filed:
`
`Dec. 29, 2011
`
`Prior Publication Data
`
`us 2012/0183535 A1
`
`Jul. 19, 2012
`
`Related US. Application Data
`
`(63) Continuation of application No. 13/ 153,317, ?led on
`J _3 2011_
`un ’
`(60) Provisional application No. 61/351,130, ?led on Jun.
`
`3, 2010, provisional application No. 61/351,655, ?led on Jun. 4, 2010, provisional application No.
`
`61/351,793, ?led 011 Jun. 4, 2010, provisional
`appllcatlon No. 61/351,762, ?led on Jun. 4, 2010,
`provisional application No. 61/419,764, ?led on Dec.
`3, 2010, prOV1slonal appllcatlon No. 61/472,138, ?led
`on Apr_ 5, 2011_
`
`(2006.01)
`(200601)
`(200601)
`(200691)
`(2006.01)
`
`(51) Int Cl
`'
`'
`A61K 31/519
`A611, 35/00
`A611) 29/00
`A611” 35/02
`C07D 487/04
`(52) U_s_ CL
`USPC ...................................... .. 514/262.1; 544/262
`(58) Field of Classi?cation Search
`USPC ...................................... .. 514/262.1; 544/262
`See application ?le for complete search history.
`R f
`Ct d
`e erences 1 e
`
`(56)
`
`U.S. PATENT DOCUMENTS
`
`3/1995 Buzzetti
`5,397,787 A
`6,160,010 A 12/2000 Uckun et a1.
`6,221,900 B1
`4/2001 Uckun et a1.
`6,326,469 B1
`12/2001 Ullrich et a1.
`6,506,769 B2
`1/2003 Snow et 81.
`6,660,744 B1
`12/2003 Hirst et a1.
`6,753,348 B2
`6/2004 Uckun et a1.
`6,770,639 B2
`8/2004 Snow et 81.
`6,921,763 B2
`7/2005 Hirst et a1.
`7,138,420 B2 11/2006 BentZien et a1.
`7,332,497 B2
`2/2008 Hirst et a1.
`7,514,444 B2
`4/2009 Honigberg et a1.
`
`7,718,662 B1
`g?
`
`5/2010 Chen
`garner
`
`2005/0008640 A1
`
`IIS e a .
`
`a
`5
`en
`7,825,118 B2 11/2010 Honigberg et a1.
`7,960,396 B2
`6/2011 Honigberg et al‘
`8,008,309 B2
`8/2011 Honigberg et al.
`8,088,781 B2
`1/2012 Honigberg et al.
`8,158,786 B2
`4/2012 Honigberg et a1.
`8,232,280 B2
`7/2012 Honigberg et a1.
`2005620316625
`21(1) (:52: 215 et al'
`2002/0155505 A1 10/2002 Wells et al.
`2003/0013125 A1
`1/2003 Braisted et a1.
`2003/0040461 A1
`2/2003 Mcatee
`EQX‘ZVG? l
`1/2005 Waegell et al.
`greswttteglal'
`
`urrle e
`
`.
`
`5/2005 Currie et al.
`2005/0101604 A1
`9/2005 Uckun
`2005/0196851 A1
`9/2005 Jimenez et al.
`2005/0209255 A1
`4/2006 Santi et a1.
`2006/0079494 A1
`7/2006 Uckun et a1.
`2006/0167090 A1
`5/2007 Staudt et al.
`2007/0105136 A1
`2007/0281907 A1 12/2007 Watkins
`
`(commued)
`
`FOREIGN PATENT DOCUMENTS
`
`EP
`WO
`WO
`WO
`W0
`
`W0
`W0
`WO
`
`1473039
`WO-97-28161
`WO-99-54286
`WO-00-00823
`WO-00-56737 A2
`
`11/2004
`8/1997
`10/1999
`1/2000
`9/2000
`
`4/2001
`WO:01:25238 A2
`6/2001
`W0_01_41754
`6/2001
`WO-01-44258 A1
`(Continued)
`
`OTHER PUBLICATIONS
`
`Hiddeman et a1. (Seminars in Oncology, 30, 1, 2, Feb. 2003, p.
`16-20).*
`
`iglly-ea et a1. (Poster Abitracts, Dec. 3, 2009, 51st ASH Annual
`eetlng and Exp0s1t10n).
`PRNewswire (Dec. 2009) and.*
`US. Appl. No 13/654,173, ?led Oct. 17, 2012, Honigberg et a1.
`US. Appl. No. 13/736,812, ?led Jan. 8, 2013, Buggy et a1.
`U.S. Appl. No. 13/747,322, ?led Jan. 22, 2013, Buggy et a1.
`U~S~APP1~ N°~ 13/747319, ?led Jim 22, 2013, Buggy et ill
`(Continued)
`
`Primary Examiner i Uma Ramachandran
`(74) Attorney, Agent, or Firm * Wilson, Sonsini, Goodrich
`-
`& Rosat1
`
`ABSTRACT
`(57)
`Disclosed herein are methods for treating a cancer compris
`ing: a. administering a Btk inhibitor to a subject suf?cient to
`result in an increase or appearance in the blood of a subpopu
`lation of lymphocytes de?ned by immunophenotyping; b.
`determining the expression pro?le of one or more biomarkers
`from one or more subpopulation of lymphocytes; and c.
`administering a second agent based on the determined
`expression pro?le.
`
`2 Claims, 39 Drawing Sheets
`
`Coalition for Affordable Drugs IV LLC – Exhibit 1001
`
`

`

`(56)
`
`References Cited
`
`US, PATENT DOCUMENTS
`
`9/2008 Pan
`2008/0214501 A1
`4/2009 Dewdney et al.
`2009/0105209 A1
`1/2010 Singh et al.
`2010/0016296 A1
`1/2010 Honigberg et al.
`2010/0022561 A1
`2/2010 Honigberg et al.
`2010/0041677 A1
`7/2010 Singh et al.
`2010/0185419 A1
`2010/0254905 A1 10/2010 Honigberg et al.
`2010/0324050 A1 12/2010 Honigberg et al.
`2011/0039868 A1
`2/2011 Honigberg et al.
`2011/0086866 A1
`4/2011 Chen
`2011/0177011 A1
`7/2011 Currie et a1.
`2011/0224235 A1
`9/2011 Honigberg et al.
`2011/0281322 A1 11/2011 Honigberg et al.
`2012/0065201 A1
`3/2012 Honigberg et al.
`2012/0071497 A1
`3/2012 Buggy et al.
`2012/0087915 A1
`4/2012 Buggy et al.
`Z: :i'
`4/2012 Buggy et al‘
`'
`4/ 2012 Honigberg et al.
`4/2012 Homgberg 9t 91-
`5/2012 Jankowskl et al.
`5/2012 Honigberg et al‘
`5 /201 2 Honigberg et al‘
`5/2012 Honigberg et al.
`5/2012 Honigberg et al~
`5000 Honlgberg et 31'
`5/2012 Hon1gberg et al.
`6/2012 Honigberg et al.
`7/2012 Honigberg et al.
`7/2012 Buggy et al.
`7/2012 Honlgberg et al~
`7/2012 Honigberg et al.
`gg?iglggg Z; 3'
`2012/0252821 A1 10/2012 Honigberg et al'
`2012/0252822 A1 10/2012 Honigberg et al:
`2012/0277225 A1 11/2012 Honigberg et al‘
`2012/0277254 A1 11/2012 Honigberg et al.
`2012/0277255 A1 11/2012 Honigberg et al.
`2012/0283276 A1 11/2012 Honigberg et 61.
`2012/0283277 A1 11/2012 Homgberg et 31'
`i
`it 3'
`1/2013 Honigberg et al.
`1/2013 Honigberg et al‘
`1/2013 Honigberg et al‘
`1/2013 Honigberg et al.
`Honigberg et al.
`2/2013
`
`2012/0100138 A1
`2012/ 0101113 A1
`2012/0101114 A1
`2012/0108547 A1
`2012/0108612 A1
`2012/01 15889 A1
`2012/0122894 A1
`2012/0129821 A1
`2012/0129873 A1
`2012/0135944 A1
`2012/0165328 A1
`2012/0178753 A1
`2012/ 0183535 A1
`2012/0184013 A1
`2012/0184567 A1
`
`2013/0005745 A1
`ZOE/0005746 A1
`2013/0012525 A1
`2013/0018060 A1
`2013/0035334 A1
`
`FOREIGN PATENT DOCUMENTS
`
`WO-02-38797 A2
`WO-02-076986 A1
`WO-02 -0 80926
`WO-03 -000187
`WO-03-013540
`WO-03 -046200
`WO-03 -097645
`WO-2004-074290
`WO-2004-096253
`WO-2004-100868
`WO-2004-100868
`WO-2005-000197
`WO-2005-005429
`WO-2005-014599
`WO-2005-037843
`WO-2005-060956
`WO-2005-074603
`WO-2006-036527
`WO-2006-050946
`WO-2006-053121
`WO-2006-099075
`WO-2006-124462
`
`5/2002
`10/2002
`10/2002
`1/2003
`2/2003
`6/2003
`11/2003
`9/2004
`11/2004
`11/2004
`11/2004
`1/2005
`1/2005
`2/2005
`4/2005
`7/2005
`8/2005
`4/2006
`5/2006
`5/2006
`9/2006
`11/2006
`
`US 8,754,090 B2
`Page 2
`
`1/2007
`WO WO-2007-002325
`5/2007
`WO WO-2007-058832
`8/2007
`WO WO-2007-087068
`11/2007
`WO WO-2007-136790
`4/2008
`W0 WO-2008-039218
`5/2008
`W0 WO-2008-054827 A2
`10/2008
`W0 “(O-2008421742
`4/2009
`W0 WO-2009-051822
`12/2009
`W0 “(O-2009458571
`1/2010
`W0 WO-ZOIO-009342 A2
`1/2010
`W0 WO-2010-009342 A3
`11/2010
`W0 “(O-2010426960
`W0 WO-ZOIO-009342 A3 12/2010
`W0 “(O-2011934907
`3/2011
`W0 “(O-2011453514
`12/2011
`W0 “(O-2011462515
`12/2011
`W0 “(O-2012021444
`2/2012
`
`OTHER PUBLICATIONS
`
`Mahajan et a1. “Rational Design and Synthesis of a Novel Anti
`leukemic Agent Targeting Bruton’s Tyrosine Kinase (BTK), LFM
`A13 [ot-Cyano-B-Methyl-N-(Z,5-Dibromophenyl)Propenamide],” J.
`Biol. Chem., 274(14):9587-9599 (Apr. 2, 1999).
`.
`“
`.
`.
`.
`.
`Mallls et a1.
`Structural character12at1on of a prollne-drlven
`conformational switch within the Itk SH2 domain,” Nat. Struct. Biol.,
`9(12)Z900-905 (2002).
`Mangla et al. “Pleiotropic consequences of Bruton tyrosin kinase
`de?ciency in myeloidlineages lead to poor in?ammatory responses,”
`Blood 104(4),1191_1197(2004)
`’
`'
`_
`'
`Merged Markush Servlce Search, Jun 27, 2005
`Middendorp et al. “Tumor Suppressor Function of Bruton Tyrosine
`Kinase is Independent of its catalytic activity”, Blood 105(1):259
`261 (2005)
`Mukoyama et al., “Preparation of imidazol [1,5-a]pyraZine deriva
`tives, pharmaceutical compositions containing them, and their uses
`for prevention or treatment of protein tyrosine kinase-related dis
`eases,” retrieved from STN Database Accession No. 20051299462,
`Patent N9 JP2005089352, Apr- 7 , 2005,
`Niiro, H. and Clark, E.A., “Regulation of B-Cell Fate by Antigen
`Receptor Signals,” Nature Reviews, 2:945-956 (2002).
`Nisitani et al. “In situ detection of activated Bruton’s tyrosine kinase
`in the Ig signaling complex by phosphopeptide-speci?c monoclonal
`“F‘POd‘es’ PNAS USA’ 96:2221'2326 (1999)
`Ol1g1no, T.J. and Dalrymple, S.A., Targetlng B cells for the treat
`ment of rheumatoid arthritis,” Arthirits Res. Ther., 5(Suppl.4):S7
`$11 (2002)
`Pagel et a1. “Induction of apoptosis using inhibitors of
`lysophosphatidic
`acid acyltransferase-beta and anti-CD20
`monoclonal antibodies for treatment of human non-Hodgkin’s
`lymphomas”, Clin. Cancer Res. (Epub Jul. 6, 2005), 11(13):4857
`4866 (2005).
`Pan et al. “Discovery of Selective Irreversible Inhibitors for Bruton’s
`Tyrosine Kinase,” ChemMedChem, 2:58-61 (2007).
`PCT/US06/49626 Search Report dated Apr. 9, 2008.
`PCT/US09/50897 IPER and Written Opinion dated Jan. 27, 2011.
`Witzens-Harig et al. “Current treatment of mantle cell lymphoma:
`results of a national survey and consensus meeting”, Ann Hematol.
`(Epub Aug. 29, 2012), 91(11):1765-1772 (Nov. 2012).
`WitZig et a1. “Lenalidomide oral monotherapy produces durable
`responses in relapsed or refractory indolent non-Hodgkin’s
`lymphoma”, J. Clin. Oncol. (Epub Oct. 5, 2009), 27:5404-5409
`(2009).
`Wolff, M.E., “Burger’s Medicinal Chemistry and Drug Discovery,”
`5th Ed. Part 1, pp. 975-977 (1995).
`Yamamoto et al. “The Orally Available Spleen Tyrosine Kinase
`Inhibitor 2-[7-(3,4-Dimethoxyphenyl)-imidazo[1,2-c]pyrimidin-5
`ylamino]-nicotinamide Dihydrochloride (BAY61-3606) Blocks
`Antigen-Induced Airway In?ammation in Rodents,” J. Pharma. and
`Exp. Therapeutics, 306(3):1174-1181 (2003).
`
`

`

`US 8,754,090 B2
`Page 3
`
`(56)
`
`References Cited
`
`OTHER PUBLICATIONS
`
`Yasuhiro et al. “ONO-WG-307, a Novel, Potent and Selective Inhibi
`tor of Bruton’s Tyrosine Kinase, in sustained inhibition of the Erk,
`Akt and PKD signaling pathways”, 53rd American Society of Hema
`tologyAnnual Meeting and Exposition, San Diego, CA, Poster #2021
`(Dec. 10-13, 2011).
`Zhu et al. “Calpain Inhibitor II Induces Caspase-dependent
`Apoptosis in Human Acute Lyrnphoblastic Leukemia and Non
`Hodgkin’s Lymphoma Cells as well as Some Solid Tumor Cells”,
`Clin. Cancer Res. 6:2456-2463 (2000).
`EP 087445136 Examination Report dated Jan. 16, 2013.
`EP 12151943.3 Examination Report dated Feb. 5, 2013.
`EP 12172842.2 Partial Search Report dated Jan. 24, 2013.
`EP 12172843.0 Search Report and Written Opinion dated Jan. 18,
`2013.
`US. Appl. No. 13/341,695 Of?ce Action mailed Feb. 1, 2013.
`US. Appl. No. 13/340,409, ?led Dec. 29, 2011, Honigberg et al.
`US. Appl. No. 13/606,949, ?led Sep. 7, 2012, Honigberg et al.
`US. Appl. No. 13/612,143, ?led Sep. 12, 2012, Honigberg et al.
`US. Appl. No. 13/654,173, ?led Oct. 17,2012, Honigberg et al.
`Advani et al. “The BTK inhibitor PCI-3 2765 is highly active and well
`tolerated in patients (PTS) with relapsed/refractory B cell malignan
`cies: ?nal results from a phase I study”, Ann. Oncol., 22(suppl 4):
`abstract 153 (2011).
`Apsel et al. “Targeted Polypharmacology: Discovery of Dual Inhibi
`tors of Tyrosine and Phosphoinositide Kinases.” Nature Chem. Bio.,
`4(11):691-699 (2008).
`Arnold et al. “Pyrrolo[2,3-d]pyrimidines Containing an Extended
`5-Substituent as Potent and Selective Inhibitors of lck 1,” Bioorg.
`Med. Chem. Ltrs. 10:2167-2170 (2000).
`Banker et al. “Modern Pharmaceutics,” p. 596 (1996).
`Brown et al. “Phase Ib trial of AVL-292, a covalent inhibitor of
`Bruton’s tyrosine kinase (Btk), in chronic lymphocytic leukemia
`(CLL) and B-non-Hodgkin lymphoma (B-NHL)”, J Clin. Oncol.
`30(suppl):abstract 8032 (2012); [online][retrieved on Oct. 4, 2012]
`Retrieved from the Internet: < http://www.asco.org/ASCOv2/Meet
`in gs/ Abstracts?&vmview:ab stidetailiview&con?D: 1 14
`&abstractID:98841>.
`Browning, J .L., “B cells move to centre stage: novel opportunities for
`autoimmune disease treatment”, Nature Reviews/Drug Discovery,
`51564-576 (Jul. 2006).
`Burchat et al., “Pyrazolo[3,4-d]pyrimidines Containing an Extended
`3-Substituent as Potent Inhibitors of Lckia Selectivity Insight,”
`Bioorg. Med. Chem. Ltrs. 12:1687-1690 (2002).
`Burger, J .A., “Targeting the microenvironment in chronic
`lymphocytic leukemia is changing the therapeutic landscape”, Curr.
`Opin. Oncol. (Epub Sep. 6, 2012), 24(6):643-649 (Nov. 2012).
`Carmi et al. “Clinical perspectives for irreversible tyrosine kinase
`inhibitors in cancer,” Biochem. Pharmacol. (Epub Aug. 4, 2012),
`84(11):1388-1399 (Dec. 2012).
`Chang et al. “The Bruton tyrosine kinase inhibitor PCI-32765 ame
`liorates autoimmune arthritis by inhibition of multiple effector cells.”
`Arthritis Research & Therapy, 13:R115 (2011).
`Cohen et al. “Structural Bioinformatics-Based Design of Selective,
`Irreversible Kinase Inhibitors,” Science, 308:1318-1321 (May 27,
`2005).
`Czuczman et al. “Rituximab in combination with ?udarabine chemo
`therapy in low-grade or follicular lymphoma”, J. Clin. Oncol.
`23(4):694-704 (Feb. 1, 2005).
`Davids et al. “Targeting the B Cell Receptor Pathway in Chronic
`Lyrnphocytic Leukemia”, Leuk. Lymphoma (Epub May 23, 2012),
`53(12):2362-2370 (Dec. 2012).
`Desiderio, S., “Role of Btk in B cell development and signaling,”
`Curr. Opin. Imm. 9:534-540 (1997).
`Dorwald, F.Z., Side Reactions in Organic Synthesis, Wiley:VCH,
`Weinheim p. IX of Preface, Wiley-VCH Verlag GmbH & Co. KGaA
`(2005).
`EA200901313 Noti?cation of Of?ce Action mailed Oct. 31, 2011.
`EA201000599 Search Report dated Nov. 15, 2010.
`
`Edwards, C.M., “BTK inhibition in myeloma: targeting the seed and
`the soil”, Blood 120(9):1757-1759 (Aug. 2012).
`EP 068500396 Search Report and Written Opinion dated Feb. 15,
`2010.
`EP 06850386.1 Search Report and Written Opinion dated Sep. 10,
`2010.
`EP 087445136 Search Report and Written Opinion dated Mar. 18,
`2010.
`EP 09798770.5 Search Report and Written Opinion dated Oct. 28,
`201 1.
`EP 101558344 Search Report and Written Opinion dated May 27,
`2010.
`EP 108239666 Search Report dated Oct. 17, 2011.
`EP 108239666 Written Opinion dated Dec. 6, 2011.
`EP 12159433 Search Report and Written Opinion dated Mar. 13,
`2012.
`EP 12166295.1 Search Report and Written Opinion dated Nov. 6,
`2012.
`EP 121662969 Search Report and Written Opinion dated Nov. 8,
`2012.
`EP 121662985 Search Report and Written Opinion dated Nov. 7,
`2012.
`EP 12166300.9 Search Report and Written Opinion dated Oct. 31,
`2012.
`EP 12166301.7 Search Report and Written Opinion dated Nov. 6,
`2012.
`EP 121663025 Search Report and Written Opinion dated Nov. 6,
`2012.
`EP 12166305.8 Search Report and Written Opinion dated Nov. 6,
`2012.
`EP 121663066 Search Report and Written Opinion dated Nov. 8,
`2012.
`EP 121728406 Search Report and Written Opinion dated Dec. 12,
`2012.
`EP 12172841.4 Search Report and Written Opinion dated Jan. 2,
`2013.
`Fabian et al. “A small molecule-kinase interaction map for clinical
`kinase inhibitors.” Nature Biotechnology, 2005, 23(3): 329-336.
`Fisher et al. “Prolonged disease-free survival in Hodgkin’s disease
`with MOPP reinduction after ?rst relapse”, Ann. Intern. Med.,
`90(5):761-763 (1979).
`Fowler et al. “The Bruton’s tyrosine kinase inhibitor ibrutinib (PCI
`32765) is active and tolerated in relapsed follicular lymphoma”, 54th
`American Society of Hematology Annual Meeting and Exposition,
`Atlanta, GA, Abstract 156 (Dec. 8-11, 2012).
`Fruman, D.A., “Xid-like Phenotypes: A B Cell Signalosome Takes
`Shape”, Immunity, 13:1-3 (Jul. 2000).
`Giuliani, N., “Multiple myeloma bone disease: pathophysiology of
`osteoblast inhibition,” Blood (Epub Aug. 17, 2006), 108(13):3992
`3996 (2006).
`Gold, M.R., “To make antibodies or not:signaling by the B-cell
`antigen receptor,” Trends in Pharmacological Sciences, 23(7):316
`324 (Jul. 2002).
`Hantschel et al. “The Btk Tyrosine Kinase is a Major Target of the
`Bcr-Abl Inhibitor Dasatinib”, PNAS 104(33):13283-13288 (2007).
`Hata et al. “Bruton’s tyrosine kinase-mediated Interleukin-2 gene
`activation in mast cells,” J. Biol. Chem. 273(18): 10979-10987
`(1998).
`Herman et al. “Bruton tyrosine kinase represents a promising thera
`peutic target for treatment of chronic lymphocytic leukemia and is
`effectively targeted by PCI-32765”, Blood (Epub Mar. 21, 2011),
`117(23):6287-6296 (Jun. 2011).
`Hiddeman et al. “Frontline therapy with rituximab added to the
`combination of cyclophosphamide, doxorubicin, vincristine, and
`prednisone (CHOP) signi?cantly improves the outcome for patients
`with advanced-stage follicular lymphoma compared with therapy
`with CHOP alone: results of a prospective randomized study of the
`German Low-Grade Lymphoma Study Group”, Blood (Epub Aug.
`25, 2005), 106(12):3725-3732 (Dec. 2005).
`Horwood et al. “Bruton’s Tyrosin Kinase Is Required for
`Lipopolysaccharideiinduced Tumor Necrosis Factor 01 Produc
`tion,” J. Exp. Med., 197(12):1603-1611 (Jun. 2003).
`
`

`

`US 8,754,090 B2
`Page 4
`
`(56)
`
`References Cited
`
`OTHER PUBLICATIONS
`
`last
`
`http://www.uspto.gov/web/of?ces/pac/dapp/1pecba.htm#7,
`accessed Feb. 16, 2011.
`Iwaki et al. “Btk Plays a Crucial Role in the Ampli?cation of FceRI
`mediated Mast Cell Activation by Kit,” J. Biol. Chem.,
`280(48):40261-40270 (Dec. 2, 2005).
`Jefferies et al. “Bruton’s Tyrosine Kinase Is a Toll/Interleukin-l
`Receptor Domain-binding Protein That Participates in Nuclear Fac
`tor KB Activation by Toll-like Receptor 4,” J. Biol. Chem.,
`278:26258-26264 (2003).
`Kawakami et al. “Terreic acid, a quinone epoxide inhibitor of
`Bruton’s tyrosine kinase,” PNAS USA, 96:2227-2232 (1999).
`Korade-Mirnics et al. “Src kinase-mediated signaling in leukocytes,”
`J. Leukoc. Bio., 68(5):603-613 (Nov. 2000).
`Kozaki et al. “Development of a Bruton’s tyrosine kinase (Btk)
`inhibitor4ONO-WG-307, a potential treatment for B-cell malignan
`cies”, 53rd American Society of Hematology Annual Meeting and
`Exposition, San Diego, CA, Poster #857 (Dec. 10-13, 2011).
`Kuppers, R., “Mechanisms of B-cell lymphoma pathogenesis,”
`Nature Reviews/Cancer, 5:251-262 (Apr. 2005).
`Kurosaki, T. “Functional dissection of BCR signaling pathways,”
`Curr. Op. Imm. 12:276-281 (2000).
`Liu et al. “Structural Basis for selective inhibition of Src family
`kinases by PPI.” Chemistry and Biology, 1999, No. 6, pp. 671-678, in
`particular table 1, p. 671.
`Luskova, P and Draber, P., “Modulation of the Fce Receptor I Sig
`naling by Tyrosin Kinase Inhibitors: Search for Therapeutic Targets
`of In?ammatory and Allergy Diseases,” Curr. Pharmaceutical Design
`10: 1727-1737 (2004).
`Mukoyama et al., “Preparation of imidazol [1,5-a]pyraZine deriva
`tives, pharmaceutical compositions containing them, and their uses
`for prevention or treatment of protein tyrosine kinase-related dis
`eases,” retrieved from STN Database Accession No. 2005:299462.
`PCT/US09/50897 Search Report dated Mar. 15, 2010.
`PCT/US08/058528 Search Report and Written Opinion dated Sep.
`30, 2008.
`PCT/US10/52377 Search Report and Written Opinion mailed Jun.
`29, 2011.
`Peterson et al. “Prolonged single-agent versus combination chemo
`therapy in indolent follicular lymphomas: a study of the cancer and
`leukemia group”, Br. J. Clin. Oncol., 21(1):5-15 (Jan. 1, 2003).
`Ponader et al. “The Bruton tyrosine kinase inhibitor PCI-32765
`thwarts chronic lymphocytic leukemia cell survival and tissue hom
`ing in vitro and in vivo”, Blood (Epub Dec. 16,2011), 119(5): 1182
`1189 (Feb. 2012).
`Powers et al. “Irreversible Inhibitors of Serine, Cysteine, and
`Threonine Proteases,” Chem. Rev., 102(12):4639-4750 (2002).
`Prakash et al. “Chicken sarcoma to human cancers: a lesson in
`molecular therapeutics,” The Ochsner Journal, 7(2):61-64 (Jan. 1,
`2007).
`Quek et al. “A role for Bruton’s tyrosine kinase (Btk) in platelet
`activation by collagen,” Curr. Biol., 8(20):1137-1140 (1998).
`Robak et al. “A Targeted Therapy for Protein and Lipid Kinases in
`Chronic Lymphocytic Leukemia”, Curr. Med. Chem. (Epub Jul. 24,
`2012), 19(31):5294-5318 (2012).
`Robak et al. “Tyrosine kinase inhibitors as potential drugs for B-cell
`lymphoid malignancies and autoimmune disorders”, Expert Opin.
`Investig. Drugs (Epub May 22, 2012), 21(7):921-947 (Jul. 2012).
`Rushworth et al. “BTK inhibitor ibrutinib is cytotoxic to myeloma
`and potently enhances bortezomib and lenalidomide activities
`through NF-KB”, Cell Signal (Epub Sep. 11, 2012), 25(1):106-112
`(Jan. 2013).
`Sada, K. andYamamura, H., “Protein-Tyrosine Kinases and Adaptor
`Proteins in FceRI-Mediated Signaling in Mast Cells,” Curr. Mol.
`Med., 3(1):85-94 (2003).
`Schaeffer, EM. and Schwartherg, P.L., “Tec family kinases in lym
`phocyte signaling and function,” Curr. Opin. Imm., 12:282-288
`(2000).
`
`Schwamb et al. “B-cell receptor triggers drug sensitivity of primary
`CLL cells by controlling glucosylation of ceramides”, Blood (Epub
`Aug. 27, 2012), 120(19):3978-3985 (Nov. 2012).
`Science IP CAS Search, Mar. 16, 2006.
`Science IP CAS Search, Sep. 5, 2006.
`Shaffer et al.“Lymphoid malignancies: the dark side of B-cell differ
`entiation,” Nature Rev. Immun., 2:920-932 (Dec. 2002).
`15.
`Smaill
`et
`al.
`“Tyrosine
`Kinase
`Inhibitors.
`and
`4-(Phenylamino)quinazoline
`4-(Phenylamino)prido[d]pyrimidine Acrylamides as Irreversible
`Inhibitors of the ATP Binding Site of the Epidermal Growth Factor
`Receptor,” J. Med. Chem., 42(10):1803-1815 (1999).
`Smith et al. “The Tec family of cytoplasmic tyrosine kinases: mam
`malian Btk, Bmx, Itk, Tec, Txk and homologs in other species,”
`BioEssays, 23:436-446 (2001).
`Smolen, J .S. and Steiner, G., “Therapeutic Strategies for Rheumatoid
`Arthritis,” Nature Reviews, 2:473-488 (2003).
`Tinmouth et al. “Fludarabine in alkylator-resistant follicular non
`Hodgkin’s lymphoma”, Leuk. Lymphoma, 41(1-2):137-145 (2001).
`Traxler et al., “Use of a Pharmacophore Model for the Design of
`EGF-R Tyrosine Kinase Inhibitors: 4-(Phenlyamino)pyrazolo[3,4
`d]pyrimidines,” J. Med. Chem., 40(22):3601-3616 (1997).
`US. Appl. No. 11/617,645 Final Of?ce Action mailed Oct. 16,2008.
`U.S. Appl. No. 11/617,645 Notice ofAllowance mailed Feb. 9, 2009.
`US. Appl. No. 11/617,645 Of?ce Action mailed Jan. 24, 2008.
`US. Appl. No. 11/617,645 Of?ce Action mailed May 13, 2008.
`US. Appl. No. 11/692,870 Final Of?ceAction mailed Aug. 19,2009.
`U.S. Appl. No. 11/692,870 Of?ce Action mailed Jan. 26, 2009.
`US. Appl. No. 12/356,498 Final Of?ce Action mailed Jul. 8, 2011.
`US. Appl. No. 12/356,498 Of?ce Action mailed Apr. 14, 2011.
`US. Appl. No. 12/499,002 Final Of?ceAction mailed Dec. 14,2012.
`U.S. Appl. No. 12/499,002 Final Of?ce Action mailed Oct. 25, 2011.
`US. Appl. No. 12/499,002 Of?ce Action mailed Jun. 5, 2012.
`US. Appl. No. 12/499,002 Of?ce Action mailed Mar. 3, 2011.
`US. Appl. No. 12/499,005 Of?ce Action mailed Feb. 17, 2011.
`US. Appl. No. 12/499,008 Of?ce Action mailed Jul. 19, 2011.
`US. Appl. No. 12/499,008 Of?ce Action mailed Mar. 9, 2011.
`US. Appl. No. 12/594,805 Of?ce Action mailed Oct. 15, 2012.
`US. Appl. No. 12/727,703 Final Of?ce Action mailed Jul. 19,2011.
`U.S. Appl. No. 12/727,703 Of?ce Action mailed Mar. 3, 2011.
`US. Appl. No. 12/887,428 Of?ce Action mailed Apr. 20, 2011.
`US. Appl. No. 13/011,258 Of?ce Action mailed Nov. 22, 2011.
`US. Appl. No. 13/162,449 Of?ce Action mailed Feb. 9, 2012.
`US. Appl. No. 13/249,066 Of?ce Action mailed Nov. 27, 2012.
`US. Appl. No. 13/312,606 Of?ce Action mailed Sep. 19, 2012.
`US. Appl. No. 13/328,718 Final Of?ceAction mailed Dec. 27, 2012.
`US. Appl. No. 13/328,718 Of?ce Action mailed Jul. 3, 2012.
`US. Appl. No. 13/340,276 Of?ce Action mailed Sep. 26, 2012.
`US. Appl. No. 13/361,733 Notice of Allowance mailed Nov. 14,
`2012.
`US. Appl. No. 13/361,733 Of?ce Action mailed Jul. 6, 2012.
`US. Appl. No. 13/404,422 Of?ce Action mailed Sep. 28, 2012.
`US. Appl. No. 13/410,110 Of?ce Action mailed Sep. 28, 2012.
`US. Appl. No. 13/439,775 Of?ce Action mailed Dec. 10,2012.
`U.S. Appl. No. 13/526, 161 Of?ce Action mailed Nov. 27, 2012.
`US. Appl. No. 13/526, 163 Of?ce Action mailed Nov. 28, 2012.
`US. Appl. No. 13/607,036 Of?ce Action mailed Nov. 14, 2012.
`Uckun et al. “Bruton’s tyrosine kinase as a molecular target in treat
`ment of leukemias and lymphomas as well as in?ammatory disorders
`and autoimmunity.” Expert Opinion Then Patents 2010, 20(1 1): 1- 14.
`Uckun, F.M., “Bruton’s Tyrosine Kinase (BTK) as a Dual-Function
`Regulator of Apoptosis,” Biochem. Pharmacology, 56:683 -691
`(1998).
`Uckun et al. “BTK as a Mediator of Radiation-Induced Apoptosis in
`DT-40 Lymphoma B Cells,” Science, 273(5278):1096-1100 (1996).
`Uckun et al. “In Vivo Pharmacokinetic Features, Toxicity Pro?le, and
`Chemosensitizing Activity of ot-Cyano-B-hydroxy-B-methyl-N
`(2,5 -dibromophenyl)propenamide
`(LFM-A13),
`a
`Novel
`Antileukemic Agent Targeting Bruton’ s Tyrosine Kinase,” Clin. Can
`cer Res., 8: 1224-1233 (2002).
`
`

`

`US 8,754,090 B2
`Page 5
`
`(56)
`
`References Cited
`
`OTHER PUBLICATIONS
`
`Uckun et al. “The Anti-leukemic Bruton’s Tyrosine Kinase Inhibitor
`ot-cyano -[5-hydroxy-[5 -mehyl -N-(2, 5 -dibromophenyl)Propenamide
`(LFM-A13) Prevents Fatal Thromboembolism,” Leuk. Lymphoma,
`44(9):1569-1577 (2003).
`Vassilev, A0. and Uckun, F.M., “Therapeutic Potential of Inhibiting
`Bruton’ s Tyrosine Kinase, (BTK),” Current Pharmaceutical Design,
`10: 1757-1766 (2004).
`Vassilev et al. “Bruton’s Tyrosine Kinase as an Inhibitor of the
`Fas/CD95 Death-inducing Signaling Complex,” J. Biol. Chem.
`274(3): 1646-1656 (1999).
`Vippagunta et al., “Crystalline Solids,” Advanced Drug Delivery
`Reviews, 48:3-26 (2001).
`Vose, J.M., “Mantle cell lymphoma: 2012 update on diagnosis, risk
`strati?cation, and clinical management”, Am. J. Hematol. 87(6):604
`609 (Jun. 2012).
`Wilkinson et al. “Selective tyrosine kinase inhibitors,” Expert Opin.
`Emerging Drugs 5(3):287-297 (2000).
`Yamamoto et al. “The Orally Available Spleen Tyrosine Kinase
`Inhibitor 2 - [7 -(3 ,4 -Dimethoxypheny1)-imidazo[1,2 -c]pyrimidin- 5 -
`ylamino]-nicotinamide Dihydrochloride (BAY61-3606) Blocks
`Antigen-Induced Airway In?ammation in Rodents,” J. Pharma. and
`Exp. Therapeutics, 306(3): 1 174-1 181 (2003).
`US. Appl. No. 13/890,498, ?led May 9, 2013, Honigberg et al.
`US. Appl. No. 13/952,531, ?led Jul. 26, 2013, Honigberg et al.
`US. Appl. No. 13/965,135, ?led Aug. 12, 2013, Buggy et al.
`US. Appl. No. 13/849,399, Mar. 22,2013, Honigberg et al.
`US. Appl. No. 13/869,700, ?led Apr. 24,2013, Buggy et al.
`US. Appl. No. 13/003,811 Of?ce Action mailed Feb. 25, 2013.
`Carrie et al. “Current Strategies of Chemotherapy in Osteosarcoma”,
`International Orthopaedics 30:445-451 (2006).
`Marina et al. “Biology and Therapeutic Advances for Pediatric
`Osteosarcoma”, The Oncologist 9:422-441 (2004).
`Picci, P. “Osteosarcoma (Osteogenic Sarcoma)”, Orphanet J. Rare
`Diseases 2(6):1-4 (2007).
`Ritter et al. “Osteo sarcoma”, Ann. Oncol. 2 1(Supplement 7):320-325
`(2010).
`US. Appl. No. 13/472,292 Of?ce Action mailed Mar. 13, 2013.
`US. Appl. No. 13/340,522 Of?ce Action mailed Mar. 13,2013.
`U.S. Appl. No. 13/340,533 Final Of?ce Action mailed Feb. 25, 2013.
`PRNewsWire, “Pharmacyclics, Inc. Announces Presentation of
`Interim Results from Phase I Trial of its First-in-Human Btk Inhibitor
`PCI-32765”, Dec. 7, 2009.
`Pollyea et al., “A Phase I Dose Escalation Study of the Btk Inhibitor
`PCI-32765 in Relapsed and Refractory B Cell Non-Hodgkin
`Lymphoma and Use of a Novel Fluorescent Probe Pharmacodynamic
`Assay”, Poster Abstract #3713, 5 1st ASH Annual Meeting and Expo
`sition (Dec. 3, 2009).
`Hiddeman et al., “Rituximab Plus Chemotherapy in Follicular and
`Mantle Cell Lymphomas”, Seminars in Oncology 30(1)Suppl.2:16
`20 (Feb. 2003).
`US. Appl. No. No. 13/340,276 Final Of?ce Action mailed Apr. 4,
`2013 .
`Ahn et al. “Michael acceptors as a tool for anticancer drug design”,
`Current Pharmaceutical Design 2(3):247-262 (1996).
`US. Appl. No. 13/312,606 Final Of?ce Action mailed Apr. 5, 2013.
`US. Appl. No. 13/404,422 Final Of?ce Action mailed Apr. 16,2013.
`U.S. Appl. No. 13/410,110 Final Of?ce Action mailed Apr. 16,2013.
`U.S. Appl. No. 13/526, 161 Final Of?ce Action mailed May 15,2013.
`U.S. Appl. No. 13/526, 163 Final Of?ce Action mailed May 15,2013.
`U.S. Appl. No. 13/249,066 Final Of?ce Action mailed May 15,2013.
`EP 12172842.2 Extended Search Report dated May 14, 2013.
`US. Appl. No. 13/341,695 Final Of?ce Action mailed Jun. 7, 2013.
`US. Appl. No. 13/439,775 Final Of?ce Action mailed Jun. 17,2013.
`U.S. Appl. No. 13/607,036 Final Of?ce Action mailed Jun. 26, 2013.
`US. Appl. No. 12/594,805 Final Of?ce Action mailed Jun. 27, 2013.
`US. Appl. No. 13/153,291 Of?ce Action mailed Jul. 5, 2013.
`US. Appl. No. 13/361,726 Of?ce Action mailed Jul. 18, 2013.
`US. Appl. No. 13/340,409 Of?ce Action mailed Jul. 19, 2013.
`US. Appl. No. 13/153,317 Of?ce Action mailed Jul. 29, 2013.
`
`Advani et al. “Effect of Btk inhibitor PCI-32765 monotherapy on
`responses in patients With relapsed aggressive NHL: Evidence of
`antitumor activity from a phase I study.” J. Clin. Oncol., 2010 ASCO
`Annual Meeting Proceedings (Post-Meeting Edition), 28(15
`Supp):8012 (2010).
`Chang et al. “PCI-45292, a Novel Btk Inhibitor With Optimized
`Pharmaceutical Properties, Demonstrates Potent Activities in Rodent
`Models of Arthritis.” ACIUARHP Scienti?c Meeting, Nov. 6-11,
`2010, Poster #286.
`Huhn et al. “Rituximab therapy of patients With B-cell chronic
`lymphocytic leukemia.” Blood 98(5): 1326-1331 (Sep. 1, 2001).
`Lou, et al. “Bruton’s tyrosine kinase inhibitors: approaches to potent
`and selective inhibition, preclinical and clinical evaluation for
`in?ammatory diseases and B cell malignancies.” J. Med. Chem.
`55:4539-4550 (2012).
`Science Daily “Counting tumor cells in blood predicts treatment
`bene?t in prostate cancer.” (Jul. 7, 2008), http://wwwsciencedaily.
`com/releases/2008/07/080706083142.htm , last accessed Jul. 23,
`2013.
`Schnute et al. “Bruton’s tyrosine kinase (Btk).” Anti-In?ammatory
`Drug Discovery. Ed. J.I. Levin and S. Laufer. (2012), pp. 297-326.
`U.S. Appl. No. 13/335,719 Of?ce Action mailed Jul. 31, 2013.
`US. Appl. No. 13/340,556 Of?ce Action mailed Jul. 31, 2013.
`US. Appl. No. 13/526,161 Of?ce Action mailed Aug. 1, 2013.
`US. Appl. No. 13/526,163 Of?ce Action mailed Aug. 2, 2013.
`US. Appl. No. 12/907,759 Of?ce Action mailed Aug. 13,2013.
`U.S. Appl. No. 13/479,053 Of?ce Action mailed Sep. 6, 2013.
`US. Appl. No. 13/340,276 Of?ce Action mailed Sep. 10, 2013.
`Gordon et al. “Somatic hypermutation of the B cell receptor genes
`B29 (IgB, CD79b) and mbl (Igor, CD79a),” PNAS 100(7):4126-4131
`(2003).
`Lossos, I.S. “Molecular Pathogenesis of Diffuse Large B-Cell
`Lymphoma,” J. Clin. Oncol. 23(26):6351-6357 (Sep. 10, 2005).
`Friedberg et al “Inhibition of Syk With fostamatinib disodium has
`signi?cant clinical activity in non-Hodgkin lymphoma and chronic
`lymphocytic leukemia,” Blood 115(13):2578-2585 (2010) [E-pub
`Nov. 17, 2009].
`Chen et al. “SYK-dependent tonic B-cell receptor signaling is a
`rational treatment target in diffuse large B-cell lymphoma,” Blood
`111(4):2230-2237 (2008) [E-pub Nov. 15, 2007].
`Kuglstatter et al. “Insights into the conformational ?exibility of
`Bruton’s tyrosine kinase from multiple ligand complex structures,”
`Protein Science 20(2):428-436 (2011) [E-pub Dec. 17, 2010].
`Davis et al. “Chronic active B-cell receptor signalling in diffuse large
`B-cell lymphoma,” Nature 463(7277):88-92 (2010).
`Yang et al. “Tyrosine kinase inhibition in diffuse large B-cell
`lymphoma: molecular basis for antitumor activity and drug resis
`tance of dasatinib,” Leukemia 22():1755-1766 (2008) [E-pub Jul. 3,
`2008].
`US. Appl. No. 14/033,344, ?led Sep. 20, 2013, Honigberg et al.
`US. Appl. No. 14/069,222, ?led Oct. 31, 2013, Honigberg et al.
`US. Appl. No. 14/073,543, ?led Nov. 6, 2013, Honigberg et al.
`US. Appl. No. 14/073,594, ?led Nov. 6, 2013, Honigberg et al.
`US. Appl. No. 14/079,508, ?led Nov. 14, 2013, Honigberg et al.
`US. Appl. No. 14/080,640, ?led Nov. 14, 2013, Honigberg et al.
`US. Appl. No. 14/080,649, ?led Nov. 14, 2013, Honigberg et al.
`US. Appl. No. 14/152,886, ?led Jan. 10, 2014, Honigberg et al.
`US. Appl. No. 13/003,811 Final Of?ce Action mailed Oct. 11,2013.
`U.S. Appl. No. 13/ 542,440 Non-Final Of?ce Action mailed Oct. 31,
`2013.
`US. Appl. No. 13/450,158 Non-Final Of?ce Action mailed Oct. 31,
`2013.
`US. Appl. No. 13/606,949 Non-Final Of?ce Action mailed Oct. 29,
`2013.
`US. Appl. No. 12/907,759 Final Of?ce Action mailed Nov. 8, 2013.
`US. Appl. No. 13/335,719 Final Of?ce Action mailed Nov. 8, 2013.
`US. Appl. No. 13/340

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