`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 1 of 107
`
`EXHIBIT H
`EXHIBIT H
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 2 of 107
`Case n2zeovcz2cewi occNAFATAALAAA
`
`US009518272B2
`
`a2) United States Patent
`US 9,518,272 B2
`(0) Patent No.:
`*Dec. 13, 2016
`(45) Date of Patent:
`Yaworskiet al.
`
`(54) NON-LIPOSOMAL SYSTEMS FOR NUCLEIC
`ACID DELIVERY
`
`(56)
`
`References Cited
`U.S. PATENT DOCUMENTS
`
`(71) Applicant: PROTIVA BIOTHERAPEUTICS,
`INC., Burnaby (CA)
`
`(72)
`
`Inventors: Ed Yaworski, Maple Ridge (CA);
`Lloyd B. Jeffs, Delta (CA); Lorne R.
`Palmer, Vancouver (CA)
`
`(73) Assignee: PROTIVA BIOTHERAPEUTICS,
`INC., Burnaby (CA)
`
`(*) Notice:
`
`Subject to any disclaimer, the term ofthis
`patent is extended or adjusted under 35
`U.S.C. 154(b) by 0 days.
`
`This patent is subject to a terminal dis-
`claimer.
`
`(21) Appl. No.: 15/153,487
`
`(22)
`
`Filed:
`
`May 12, 2016
`
`(65)
`
`Prior Publication Data
`
`US 2016/0251681 Al
`
`Sep. 1, 2016
`
`Related U.S. Application Data
`
`(63) Continuation of application No. 14/642,452, filed on
`Mar. 9, 2015, which is a continuation of application
`No.
` 13/807,288,
`filed
`as
`application No.
`PCT/CA2011/000778 on Jun. 30, 2011, now Pat. No.
`9,006,417.
`
`(60) Provisional application No. 61/360,480, filed on Jun.
`30, 2010.
`
`(51)
`
`(2006.01)
`(2006.01)
`(2006.01)
`(2006.01)
`(2006.01)
`(2006.01)
`(2006.01)
`(2006.01)
`(2006.01)
`(2010.01)
`(2006.01)
`(2006.01)
`
`Int. Cl.
`CO7H 21/04
`CI2N 15/88
`AGIK 9/107
`AGIK 9/51
`AGIK 31/7088
`AGIK 31/7105
`AGIK 31/712
`AGIK 31/713
`AGIK 47/14
`CI2N 15/113
`AGIK 47/48
`AOLK W127
`(52) U.S. Cl.
`CPC wees CI2N 1548 (2013.01); A6LK 9/1075
`(2013.01); A61K 9/5123 (2013.01); A6LK
`31/7088 (2013.01); A6LK 31/712 (2013.01);
`AGIK 31/713 (2013.01); A6LK 31/7105
`(2013.01); A6IK 47/14 (2013.01), A61K
`47/48046 (2013.01); C12N 15/113 (2013.01);
`AOIK 9/1272 (2013.01); A6LK 9/1274
`(2013.01); CI2N 2310/14 (2013.01); C12N
`2310/321 (2013.01); CI2N 2310/3515
`(2013.01); CI2N 2320/32 (2013.01)
`(58) Field of Classification Search
`CPC vicecccscrssssecrsscnseecersetesenscnssenseeseonees CO7H 21/04
`
`See application file for complete search history.
`
`4,394,448 A
`4,438,052 A
`4,515,736 A
`4,598,051 A
`4,897,355 A
`5,013,556 A
`5,171,678 A
`5,208,036 A
`5,225,212 A
`5,264,618 A
`5,279,833 A
`5,283,185 A
`5,320,906 A
`5,334,761 A
`5,545,412 A
`5,578,475 A
`5,627,159 A
`5,641,662 A
`5,656,743 A
`5,674,908 A
`5,703,055 A
`5,705,385 A
`
`7/1983 Szoka, Jr. et al.
`3/1984 Wederet al.
`5/1985 Deamer
`7/1986 Papahadjopouloset al.
`1/1990 Eppstein et al.
`5/1991 Woodle et al.
`12/1992 Behretal.
`5/1993 Eppstein et al.
`7/1993 Martin et al.
`11/1993 Felgneret al.
`1/1994 Rose
`2/1994 Epandetal.
`6/1994 Eleyet al.
`8/1994 Gebeyehuet al.
`8/1996 Eppstein et al.
`11/1996 Jessee etal.
`5/1997 Shih etal.
`6/1997 Debset al.
`8/1997 Buschetal.
`10/1997 Haceset al.
`12/1997 Felgneret al.
`1/1998 Bally etal.
`(Continued)
`
`FOREIGN PATENT DOCUMENTS
`
`CA
`CA
`
`2309727 Al
`2271582 Al
`
`4/1999
`11/1999
`
`(Continued)
`
`OTHER PUBLICATIONS
`
`Arpicco, S., et al., “Preparation and Characterization of Novel
`Cationic Lipids Developed for Gene Transfection,” Proceed. Intl
`Symp. Control. Rel. Bioact. Mater. (Controlled Release Society,
`Inc.), 1999, vol. 26, pp. 759-760.
`Arpicco, S., et al., “Synthesis, characterization and transfection
`activity of new saturated and unsaturated cationic lipids,” IL
`Farmaco, 2004, vol. 59, pp. 869-878.
`Ballas, N., et al., “Liposomes bearing a quaternary ammonium
`detergent as an efficient vehicle for functional transfer of TMV-
`RNAinto plant protoplasts,” Biochimica et Biophysica Acta, 1988,
`vol. 939, pp. 8-18.
`Barinaga, M., “Step Taken Toward Improved Vectors for Gene
`Transfer,” Science, 1994, vol. 266, p. 1326.
`Bass, “The Short Answer,” Nature, 2001, 411: 428-9.
`Beale, G., et al., “Gene Silencing Nucleic Acids Designed by
`Scanning Arrays: Anti-EGFR Activity of siRNA, Ribozyme and
`DNAEnzymes Targeting a Single Hybridization-accessible Region
`using the Same Delivery System,” Journal of Drug Targeting, 2003,
`vol. 11, No. 7, pp. 449-456.
`(Continued)
`
`Primary Examiner — Kimberly Chong
`(74) Attorney, Agent, or Firm — Kilpatrick Townsend &
`Stockton LLP
`
`ABSTRACT
`(57)
`The present invention provides novel, stable lipid particles
`having a non-lamellar structure and comprising one or more
`active agents or therapeutic agents, methods of making such
`lipid particles, and methods of delivering and/or adminis-
`tering such lipid particles. More particularly, the present
`invention provides
`stable nucleic
`acid-lipid particles
`(SNALP) that have a non-lamellar structure and that com-
`prise a nucleic acid (such as one or moreinterfering RNA),
`methods of making the SNALP, and methods of delivering
`and/or administering the SNALP.
`22 Claims, 24 Drawing Sheets
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 3 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 3 of 107
`
`US 9,518,272 B2
`
`Page 2
`
`(56)
`
`References Cited
`
`U.S. PATENT DOCUMENTS
`
`6/2009 Chuet al.
`2009/0143583 Al
`11/2009 MacLachlan etal.
`2009/0291131 Al
`5/2010 Yaworskiet al.
`2010/0130588 Al
`6/2010 Chu etal.
`2010/0159593 Al
`3/2012 MacLachlan etal.
`2012/0058188 Al
`5/2012 Yangetal.
`2012/0136073 Al
`6/2012 Nilssenetal.
`2012/0148663 Al
`7/2012 Yaworskietal.
`2012/0183581 Al
`9/2012 Chu et al.
`2012/0238747 Al
`2012/0276209 Al* 11/2012 Cullis wo... A61K 9/1272
`424/490
`
`11/2013 Yaworskietal.
`2013/0303587 Al
`3/2014 Yaworskiet al.
`2014/0065228 Al
`10/2014 MacLachlan etal.
`2014/0294937 Al
`6/2015 Yaworskiet al.
`2015/0164799 Al
`2/2016 Yaworskietal.
`2016/0032320 Al
`FOREIGN PATENT DOCUMENTS
`
`4/1998 Hawley-Nelsonetal.
`5,736,392 A
`iohoos See et al.
`;
`5,820,873 A
`31909 reaetal
`oeseLs ‘
`9/1999 Dwyer et al.
`50589001 A
`11/1999 Wheeleret al.
`5,976,567 A
`11/1999 Wheeleret al.
`5,981,501 A
`2/2000 Jessee
`6,020,202 A
`2/2000 Schwartz etal.
`6,020,526 A
`3/2000 Schwartz etal.
`6,034,135 A
`4/2000 _Hawley-Nelsonetal.
`6,051,429 A
`aoeoe Cebeyeu “ al.
`eo ‘
`_1/2001 Dwyer et al
`6172049 Bl
`6/2001 Schwartz et al.
`6,251,939 Bl
`9/2001 Aneja
`6,284,267 BL
`9/2001 Semple etal.
`6,287,591 Bl
`11/1999
`2330741 Al
`CA
`1/2002 Schwartz et al.
`6,339,173 Bl
`7/2001
`2397016 Al
`CA
`4/2002 Hawley-Nelsonet al.
`6,376,248 Bl
`8/2004
`2513623
`CA
`3/2003 Wheeleret al.
`6,534,484 Bl
`5/1991
`03-126211
`JP
`7/2003 Wheeler et al.
`6,586,410 Bl
`8/1993
`05-202085
`JP
`10/2003 Schwartz et al.
`6,638,529 B2
`3/1994
`06-080560
`JP
`11/2003 Eiblet al.
`6,649,780 BI
`8/2002
`2002-525063
`JP
`12/2003 Hays et al.
`6,671,393 B2
`3/2003
`003-505401
`1p
`2/2004: Wheeler
`6,696,424 Bl
`11/2004 Wheeleret al.
`6,815,432 B2
`8/2007
`2007-524349
`JP
`2/2005 Wheeler et al.
`6,858,224 B2
`10/1991
`91/16024 Al
`wo
`1/2007 Chuetal.
`7,166,745 Bl
`3/1993
`93/05162 Al
`wo
`9/2008. Wh
`7427902 Bl
`6/1993
`12240 Al
`eeleret al.
`an
`93
`WO
`1/2009 Chuetal.
`7,479,573 B2
`7/1993
`93/12756 A2
`WO
`10/2009 Chu etal.
`7,601,872 B2
`
`
`
`7,687,070 B2 93/24640 A2—12/19933/2010 Gebeyehuetal. WO
`7,745,651 B2
`6/2010 Heyeset al.
`wo
`93/25673 Al
`12/1993
`7,799,565 B2
`9/2010 MacLachlan etal.
`wo
`95/02698 Al
`1/1995
`7,803,397 B2
`9/2010 Heyesetal.
`wo
`95/18863 Al
`7/1995
`7,807,815 B2
`10/2010 MacLachlan et al.
`wo
`95/35301 Al
`12/1995
`7,838,658 B2
`11/2010 MacLachlan etal.
`wo
`96/02655 Al
`2/1996
`7,901,708 B2
`3/2011 MacLachlan etal.
`wo
`96/10390 Al
`4/1996
`7,915,450 B2
`3/2011 Chu etal.
`WO
`96/40964 A2
`12/1996
`7,982,027 B2
`7/2011 MacLachlan et al.
`wo
`96/41873 Al
`12/1996
`
`8,058,068 B2=11/2011 Hawley-Nelson et al. Wo 98/51285 A2 11/1998
`
`
`8,058,069 B2
`11/2011 Yaworski
`wo
`00/03683 A2
`1/2000
`8,101,741 B2
`1/2012 MacLachlan etal.
`wo
`00/15820 Al
`3/2000
`8,158,827 B2
`4/2012. Chu etal.
`8188963 B2
`5/2012 M
`wo
`00/62813 A2
`10/2000
`noes
`acLachlan et al.
`WO
`01/05374 Al
`1/2001
`8,227,443 B2
`7/2012 MacLachlan etal.
`wo
`01/05873 Al
`1/2001
`8,236,943 B2
`8/2012 Lee et al.
`
`8,283,333 B2 01/75164 A2—10/200110/2012 Yaworskietal. WO
`
`
`8,455,455 Bl
`6/2013 Robbinsetal.
`WO
`01/93836
`12/2001
`
`8,492,359 B2 02/034236 A2—_5/20027/2013. Yaworskietal. wo
`
`
`
`8,513,403 B2 02/087541 Al—11/20028/2013 MacLachlan et al. WO
`
`
`8,569,256 B2
`10/2013 Heyeset al.
`wo
`03/097805 A2
`11/2003
`8,598,333 B2
`12/2013 MacLachlan etal.
`wo
`2004/065546 A2
`8/2004
`8,822,668 B2
`9/2014 Yaworskietal.
`wo
`2004/110499 Al
`12/2004
`
`9,006,417 B2 2005/007196 A2—1/20054/2015 Yaworskietal. wo
`
`
`9,404,127 B2
`8/2016 Yaworski etal.
`Wo
`2005/026372 Al
`3/2005
`2001/0048940 Al
`12/2001 Tousignantet al.
`WO
`2005/035764 Al
`4/2005
`2003/0069173 Al
`4/2003 Hawley-Nelsonetal.
`Wo
`2005/120152 A2
`12/2005
`
`5/2006
`2006/053430 Al
`wo
`4/2003. MacLachlan
`2003/0077829 Al
`7/2003 Fosnaughetal.
`2003/0143732 Al
`2/2007
`2007/012191
`wo
`1
`4/2004 Davisetal.
`2004/0063654 Al
`inn et al.
`5/2007
`2007/056861 Al
`wo
`7/2004. Fj
`5004/0142802 Al
`7/2009
`2009/086558 Al
`wo
`12/2004 Tachasetal.
`2004/0253723 Al
`
`
`
`2004/0259247 Al 2009/111658 A2—9/200912/2004 Tuschletal. WO
`2005/0064595 Al
`3/2005 Macl.achlan etal.
`WO
`2009/127060
`10/2009
`2005/0118253 Al
`6/2005 MacLachlan etal.
`Wo
`2010/042877 Al
`4/2010
`
`2005/0260757 Al 2010/048228 A2—4/201011/2005 Gebeyehuetal. wo
`
`
`2006/0008910 Al
`1/2006 MacLachlan etal.
`wo
`2010/088537 A2
`8/2010
`
`2006/0147514 Al 2010/105209 Al—-9/20107/2006 _Gebeyehuetal. wo
`
`
`2006/0228406 Al
`10/2006 Chiou etal.
`wo
`2010/144740 Al
`12/2010
`2006/0240093 Al
`10/2006 MacLachlan etal.
`WO
`2011/000107 Al
`1/2011
`2007/0042031 Al
`2/2007 MacLachlan etal.
`wo
`2011/140627
`11/2011
`2007/0202598 Al
`8/2007 Chu etal.
`wo
`2012/019168 A2
`2/2012
`2007/0202600 Al
`8/2007 Chuetal.
`wo
`2012/045075 Al
`4/2012
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 4 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 4 of 107
`
`US 9,518,272 B2
`
`Page 3
`
`(56)
`
`References Cited
`FOREIGN PATENT DOCUMENTS
`
`Hawley-Nelson, P., et al., “LipofectAmine™ Reagent: A New,
`Higher Efficiency Polycationic Liposome Transfection Reagent,”
`Focus, 1993, vol. 15, No. 3, pp. 73-80.
`Heyes et al., “Cationic lipid saturation influences intracellular
`WO 2012/135805 A2=10/2012
`
`delivery of encapsulated nucleic acids,” Journal of Controlled.
`WO
`2012/158736 Al
`11/2012
`Release, 2005, vol. 107, pp. 276-287.
`WO
`2015/011633 Al
`1/2015
`Heyeset al., “Synthesis of novel cationiclipids: effect of structural
`modification on the efficiency of gene transfer,” J. Med. Chem.,
`2002, vol. 45, pp. 99-114.
`Hyde, S., et al., “Correction of the ion transport defect in cystic
`fibrosis transgenic mice by gene therapy,” Nature, 1993, vol. 362,
`pp. 250-255.
`Jeffs, L. et al, “A scalable, extrusion-free method for efficient
`liposomal
`encapsulation of plasmid DNA,” Pharmaceutical
`Research, 22(3):362-372, 2005.
`Jiang, L., et al., “Comparison of protein precipitation methods for
`sample preparation prior to proteomic analysis,” Journal of Chro-
`matography A, 2004, vol. 1023, pp. 317-320.
`Juliano, R., et al., “The Effect of Particle Size and Charge on the
`Clearance Rates of Liposomes and Liposome Encapsulated Drugs,”
`Biochem. Biophys. Res. Commun., 1975, vol. 63, No. 3, pp.
`651-658.
`Keough,K., “Influence of chain unsaturation and chain position on
`thermotropism and intermolecular interactions in membranes,”
`Biochem. Soc. Transactions, 1990, vol. 18, No. 5, pp. 835-837.
`Kum,H. et al., “Cationic solid lipid nanoparticles reconstituted from
`low density lipoprotein components for delivery of siRNA,”
`Molecular Pharmaceutics, 5(4):622-631, 2008.
`Krichevsky, A. et al., “RNAi functions in cultured mammalian
`neurons,” PNAS, 99(18):11926-29, 2002.
`Lawrence et al. “The formation, characterization and stability of
`non-ionic surfactant vesicles,” S.T.P. Pharma Sciences, 1996, vol. 6,
`No. 1, pp. 49-60.
`Lawrence et al., “Synthesis and aggregation properties of dialkyl
`polyoxyethylene glycerol ethers,” Chemistry and Physics of Lipids,
`1996, 82(2):89-100.
`Legendre, J.-Y. et al., “Delivery of Plasmid DNA into Mammalian
`Cell Lines Using pH-Sensitive Liposomes: Comparison with
`Cationic Liposomes,” Pharm. Res., 1992, vol. 9, No. 10, pp.
`1235-1242.
`Leventis, R., et al., “Interactions of mammalian cells with lipid
`dispersions containing novel metabolizable cationic amphiphiles,”
`Biochem. Biophys. Acta, 1990, vol. 1023, pp. 124-132.
`Liu,et al., “Cationic Liposome-mediated Intravenous Gene Deliv-
`ery”, J. Biol. Chem., 1995, V. 270, pp. 24864-24870.
`Marshall, E., “Gene Therapy’s Growing Pains,” Science, 1995, vol.
`269, pp. 1050-1055.
` solid-lipid
`cationic
`“Employment of
`al.,
`Montana, G.
`et
`nanoparticles as RNA carriers,” Bioconjugate Chemistry, 18:302-
`308, 2007.
`Murahashi et al., “Synthesis and evaluation of neoglycolipid for
`liposome modification,” Biol. Pharm. Bull., 1997, 20(6):704-707.
`Olbrich, C. et al., “Cationic solid-lipid nanoparticles can efficiently
`bind and transfect plasmid DNA,” J. Controlled Release, 77:345-
`355, 2007.
`Orkin,S., et al., NIH Report, Report and Recommendationsof the
`Panel to Assess the NIH Investment in Research on Gene Therapy,
`1995.
`Parr et al., Factors influencing the retention and chemicalstability
`of polly(ethylene glycol)-lipid conjugates incorporated into large
`unilamellar vesicles, Biochimica et Biophysica Acta,
`1994,
`1195:21-30.
`Paul, C., et al., “Effective expression of small interfering RNA in
`human cells,” Nature Biotech., 2002, vol. 20, pp. 505-508.
`Puyal, C., et al., “A new cationic liposome encapsulating genetic
`material: A potential delivery system for polynucleotides,” Eur. J.
`Biochem., 1995, vol. 228, pp. 697-703.
`Rotenberg, M.
`et
`al.,
`“Physico-chemical characterization of
`Intralipid™ emulsions,” Biochemica et Biophysica Acta, 1086:265-
`272, 1991.
`
`OTHER PUBLICATIONS
`Behr, J.-P., “Synthetic Gene-Transfer Vectors,” Acc. Chem. Res.,
`1993, vol. 26, pp. 274-278.
`Brigham,K.., et al., “Rapid Communication: In vivo Transfection of
`Murine Lungs with a Functioning Prokaryotic Gene Using a Lipo-
`some Vehicle,” The American Journal of the Medical Sciences,vol.
`298, No. 4, pp. 278-281.
`Brummelkamp,et al., “A System for Stable Expression of Short
`Interfering RNAs in Mammalian Cells,” Science, 2002, V. 296. pp.
`550-553.
`Ceve, G., “How Membrane Chain-Melting Phase-Transition Tem-
`perature is Affected by the Lipid Chain Asymmetry and Degree of
`Unsaturation: An Effective Chain-Length Model,” Biochemistry,
`1991, vol. 30, pp. 7186-7193.
`Choi, S. et al., “Novel cationic solid lipid nanoparticles enhanced
`p53 gene
`transfer
`to
`lung cancer
`cells,” European J. of
`Pharmaceutics and Biopharmaceutics, 68:545-554, 2008.
`Chonn et al., “Recent advances in liposomal drug-delivery sys-
`tems,” Current Opinion in Biotechnology, 1995, vol. 6, pp. 698-708.
`Cortesi, R., et al., “Effect of cationic liposome composition on in
`vitro cytotoxicity and protective effect on carried DNA,” Interna-
`tional Journal of Pharmaceutics, 1996, vol. 139, pp. 69-78.
`Crystal, R., “Transfer of Genes to Humans: Early Lessons and
`Obstacles to Success,” Science, 1995, vol. 270, pp. 404-410.
`Culver K., “The First Human Gene Therapy Experiment,” Gene
`Therapy: A Handbook for Physicians, 1994, pp. 33-40.
`Duzgunes, N., “Membrane Fusion,” Subcellular Biochemistry,
`1985, vol. 11, pp. 195-286.
`Dwarki, V.J., et al., “Cationic Liposome-Mediated RNA Transfec-
`tion,” Methods in Enzymology, 1993, vol. 217, pp. 644-654.
`Elbashir, et a., “Duplexes of 21-nucleotide RNAs mediate RNA
`interference in cultured mammalian cells,” Nature, May 2001, pp.
`494-498, vol. 411.
`Enoch, H., et al., “Formation and properties of 1000-A-diameter,
`single-bilayer phospholipid vesicles,” Proc. Natl. Acad. Sci. USA,
`1979, vol. 76, No. 1, pp. 145-149.
`Epand, Richard M. et al., “Phosphatidylcholine structure determines
`cholesterol solubility and lipid polymorphism,” Chemistry and.
`Physics of Lipids, 2005, vol. 135, pp. 39-53.
`Felgner, J., et al., “Cationic Lipid-Mediated Transfection in Mam-
`malian Cells: ‘Lipofection,’” J. Tiss. Cult. Meth., 1993, vol. 15, pp.
`63-68.
`Felgner,J., et al., “Enhanced Gene Delivery and Mechanism Studies
`with a Novel Series of Cationic Lipid Formulations,” The Journal of
`Biological Chemistry, 1994, vol. 269, No. 4, pp. 2550-2561.
`Felgner, P., et al., “Lipofection: A highly efficient, lipid-mediated
`DNA-transfection procedure,” Proc. Natl. Acad. Sci. USA, 1987,
`vol. 84, pp. 7413-7417.
`Felgner, P.L., et al., “Cationic Liposome Mediated Transfection,”
`Proc. West. Pharmacol. Soc., 1989, vol. 32, pp. 115-121.
`Gao, X., et al., “A Novel Cationic Liposome Reagent for Efficient
`Transfection of Mammalian Cells,” Biochem. Biophys. Res.
`Comm., 1991, vol. 179, No. 1, pp. 280-285.
`Gershon, H., et al., “Mode of Formation and Structural Feature of
`DNA-Cationic Liposome Complexes Used for Transfection,” Bio-
`chemistry, 1993, vol. 32, pp. 7143-7151.
`Global Newswire, retrieved from http://globalnewswire.com on
`Feb. 27, 2013, Tekmira sues Alnylam Pharmaceuticals for repeated
`misuse of trade secrets and confidential information, Mar. 16, 2011,
`pp. 1-3.
`Guy-Caffey,J., et al., “Novel Polyaminolipids Enhance the Cellular
`Uptake of Oligonucleotides,” The Journal of Biological Chemistry,
`1995, vol. 270, No. 52, pp. 31391-31396.
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 5 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 5 of 107
`
`US 9,518,272 B2
`Page 4
`
`(56)
`
`References Cited
`OTHER PUBLICATIONS
`
`Rudolph, C. et al., “Application of novel solid lipid nanoparticle
`(SLN)-gene vector formulations based on a dimeric HIV-1 TAT-
`peptide in vitro and in vivo,” Pharmaceutical Research, 21(9):1662-
`1669, 2004.
`Sawada et al., “Microemulsions in supercritical CO, utilizing the
`polyethyleneglycol dialkylglycerol and their use for the solubiliza-
`tion of hydrophiles,” Dyes and Pigments, 2005, pp. 64-74, vol. 65.
`Shin, et al. “Acid-triggered release via dePEGylation of DOPE
`liposomescontaining acid-labile vinyl ether PEG-lipids,” Journal of
`Controlled Release, 2003, vol. 91, pp. 187-200.
`Smisterova,J. et al., “Molecular shape of the cationic lipid controls
`the structure of cationic lipid/dioleylphosphatidylethanolamine-
`DNA complexes and the efficiency of gene delivery,” J. Biol.
`Chem., 276(50):47615-47622, 2001.
`Songet al., “Characterization of the inhibitory effect of PEG-lipid
`conjugates on the intracellular delivery of plasmid and antisense
`DNA mediated by cationic lipid liposomes,” Biochimica et
`Biophysica Acta, 2002, 1558:1-13.
`Sorensen,et al., “Gene Silencing by Systemic Delivery of Synthetic
`siRNAsin Adult Mice”, J. Biol. Chem., 2003, V. 327, pp. 761-766.
`Spagnou,S., et al., “Lipidic Carriers of siRNA: Differences in the
`Formulation, Cellular Uptake, and Delivery with Plasmid DNA,”
`Biochemistry, 2004, vol. 43, pp. 13348-13356.
`Stamatatos, L., et al., “Interactions of Cationic Lipid Vesicles with
`Negatively Charged Phospholipid Vesicles and Biological Mem-
`branes,” Biochemistry, 1988, vol. 27, pp. 3917- 3925.
`Szoka, F., et al., “Comparative Properties and Methods of Prepa-
`ration of Lipid Vesicles (Liposomes),” Ann. Rev. Biophys. Bioeng.,
`1980, vol. 9, pp. 467-508.
`
`Szoka,F., et al., “Procedure for preparation of liposomes with large
`internal aqueous space and high capture by reverse-phase evapo-
`ration,” Proc. Natl. Acad. Sci. USA, 1978, vol. 75, No. 9, pp.
`4194-4198.
`Tabatt, K. et al., “Effect of cationic lipid and matrix lipid compo-
`sition on solid lipid nanoparticle-mediated gene transfer,” European
`J. of Pharmaceutics and Biopharmaceutics, 57:155-162, 2004.
`Teixeira, H. et al., “Characterization of oligonucleotide/lipid inter-
`actions in submicron cationic emulsions: influence of the cationic
`lipid structure and the presence of PEG-lipids,” Biophysical Chem-
`istry, 92:169-181, 2001.
`Tekmira Pharmaceuticals and Protiva Biotherapeutics Inc., Poster
`entitled “Manufacturing, Safety and Efficacy of SNALP Formulated.
`siRNA,” Presented. at CHI—Discovery on Target—Oct. 23, 2008,
`Boston, MA, by Ian MacLachlan.
`Templeton, “Cationic Liposome-mediated Gene Delivery In vivo”,
`Bioscience Reports, 2002, vol. 22, No. 2, pp. 283-295.
`Van Der Woude,I, et al., “Parameters influencing the introduction
`of plasmid DNAinto cells by the use of synthetic amphiphiles as a
`carrier system,” Biochimica et Biophysica Acta, 1995, vol. 1240,
`pp. 34-40.
`Wheeler, et al., “Stabilized Plasmid-lipid Particles: Constructions
`and Characterization,” Gene Therapy, V. 6, pp. 271-281.
`Wilson, R., et al., “Counterion-Induced Condensation of Deoxyri-
`bonucleic Acid,” A Light-Scattering Study, Biochemistry, 1979, vol.
`18, No. 11, pp. 2192-2196.
`Woodle, M.C., et al., “Versatility in lipid compositions showing
`prolonged circulation with
`sterically
`stabilized liposomes,”
`Biochimica et Biophysica Acta, 1992, vol. 1105, pp. 193-200.
`Xu,Y. et al., “Physicochemical characterization and purification of
`cationic lipoplexes,” Biophysical Journal, 77:341-353, 1999.
`Zhu, N., et al., “Systemic Gene Expression After Intravenous DNA
`Delivery into Adult Mice,” Science, 1993, vol. 261, pp. 209-211.
`
`* cited by examiner
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 6 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 6 of 107
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 1 of 24
`
`US 9,518,272 B2
`
`Step One: Blending
`
`Lipids stock in 90% Ethanol
`
`Impingement
`Zone
`
`SIRNA
`IRNA
`
`stock in
`kin EDTA
`
`Peristaltic
`Pump
`
`Stabilized
`NALP in 45%
`Ethanol
`
`Step Two: Diluting
`
`Stabilized NALP
`in 45% Ethanol
`
`Dilution Zone
`
` Peristaltic
`Warm
`Pump
`citrate/NaCl
`buffer
`
`Stabilized
`NALP in 22.5%
`Ethanol
`
`FIG. TA
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 7 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 7 of 107
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 2 of 24
`
`US 9,518,272 B2
`
`
`
`Lipidsstockin100%Ethanol
` siRNA
`stockinEDTA
`
`SNALPin50%Ethanol
`
`Impingement
`Zone
`
`Stabilized NALP in 17% Ethanol
`
`FIG. 1B
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 8 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 8 of 107
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`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 3 of 24
`
`US 9,518,272 B2
`
`aman
`
`Climate Chamber
`
`FIG. 2A
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 9 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 9 of 107
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 4 of 24
`
`US 9,518,272 B2
`
`SeTorsz3
`Se.
`
`“a
`
`The cryo vitrification technique
`=
`
`etoctaee. MA
`
`
`‘Bare HPF«6Sample drop placed... and thinned «Sample spanning _... and vitrified in
`
`on the grid
`by blotting
`holes in film
`liquid ethane
`
`
`t
`v
`eawenonneneB11
`
`
`
`
`ies tg) opti
`£2 9 trPa
`
`
`tA ee
`
`Grid with holey polymerfilm
`(HPF)
`
`eeeeertea
`
`FIG. 2B
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 10 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 10 of 107
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`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 5 of 24
`
`US 9,518,272 B2
`
` =I
`
`
`
` °
`Hole size: 1-6 pm
`
`.
`
`|
`Thickness of sample film:
`10-500 nm
`
`FIG. 2C
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 11 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 11 of 107
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 6 of 24
`
`US 9,518,272 B2
`
`[lipid] mg/mL
`
`Particle size (nm)
`
`Final encapsulation (%)
`
`Number-averaged
`Diametersize (nm)
`
`(08)
`
`FIG. 3
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 12 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 12 of 107
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 7 of 24
`
`US 9,518,272 B2
`
`[lipid] mg/mL
`
`Particle size
`(nm)
`
`90.1)|96a
`
`
`Final encapsulation (%)
`
`Number-averaged
`Diametersize (nm)
`
`
`
`
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 13 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 13 of 107
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 8 of 24
`
`US 9,518,272 B2
`
`flipid] mg/mL
`
`Particle size
`(nm)
`
`
`
`
`Final encapsulation (%)
`
`Number-averaged
`Diameter size (nm)
`
`
`
`pe Pe05)ee
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 14 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 14 of 107
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 9 of 24
`
`US 9,518,272 B2
`
`
`
`[lipid] mg/mL
`
`
`
`Final encapsulation (%)
`
`Number-averaged
`Particle size
`Diametersize (nm)
`(nm)
`10.09) [|
`
`
`
`
`
`
`
`FIG. 6
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 15 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 15 of 107
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 10 of 24
`
`US 9,518,272 B2
`
`Presenceof lamellar particles using SDM
`
`particles
`
`%lamellar
`
`
`pe 10:15 SNALP
`
`
`594 (77%)
`
`173 (23%)
`
`Numberofnon-
`lamellar particles
`
`Numberof
`lamellarparticles
`
`2-30 SNALP
`
`665 (91%)
`
`4:57 SNALP
`
`325 (95%)
`
`4:62 SNALP
`
`313 (99%)
`
`
`
`
`4 (1%)
`
`
`
`67 (9%)
`
`16 (5%)
`
`FIG. 7
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 16 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 16 of 107
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 11 of 24
`
`US 9,518,272 B2
`
`Number-averaged
`Diameter size (nm)*
`
`sa(007)
`
`[lipid] mg/mt
`
`Particle size
`(nm)
`
`Final encapsulation (%)
`
`FIG. 8
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 17 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 17 of 107
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 12 of 24
`
`US 9,518,272 B2
`
`
`
`
`[lipid] mg/mL
`
`Particle size
`(nm)
`
`65 0.10
`
`Final encapsulation (%)
`
`Number-averaged
`Diameter size (nm)*
`
`
`
`
`
`
`
`FIG. 9
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 18 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 18 of 107
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`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 13 of 24
`
`US 9,518,272 B2
`
` {lipid} mg/mL
`
`
`
`Number-averaged
`Particle size
`Diametersize (nm)
`(am)
`7g(0.03) |
`
`Final encapsulation (%)
`
`ce
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 19 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 19 of 107
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`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 14 of 24
`
`US 9,518,272 B2
`
`{lipid] mg/mL
`
`Particle size
`(nm)
`
`78008
`
`s
`
`Final encapsulation (%)
`
`Number-averaged
`Diameter size (nm)
`
`FIG. 11
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 20 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 20 of 107
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`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 15 of 24
`
`US 9,518,272 B2
`
`Presence of lamellar particles using DDM
`
`particles
`
`%lamellar
`
`P| 2:30 SNALP
`
`Numberof non-
`
`1386 (99%)
`
`2:40 SNALP
`
`41194 (99%)
`
`4:57 SNALP
`
`694 (>99%)
`
`4:62 SNALP
`
`707 (>99%)
`
`lamellar particles Numberof
`
`lamellar particles
`
`14 (1%)
`
`10 (1%)
`
`2 (<1%)
`
`2 (<1%)
`
`FIG. 12
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 21 of 107
`22-CV-02229-MKV Document 42-9 Filed 09/06/22 Page 21 of 107
`Case 1
`
`Sheet 16 of 24
`
`US 9,518,272 B2
`
`Dec. 13, 2016
`
`U.S. Patent
`
`FIG. 13
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 22 of 107
`22-CV-02229-MKV Document 42-9 Filed 09/06/22 Page 22 of 107
`Case 1
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 17 of 24
`
`US 9,518,272 B2
`
`
`
`FIG. 14
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 23 of 107
`22-CV-02229-MKV Document 42-9 Filed 09/06/22 Page 23 of 107
`Case 1
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 18 of 24
`
`US 9,518,272 B2
`
`
`
`FIG. 15
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 24 of 107
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 19 of 24
`
`
`
`
`02OQ2©a9@SONNS
`
`
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 25 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 25 of 107
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`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 20 of 24
`
`US 9,518,272 B2
`
`BO pennennenannsnnnnnnnsnnnsennnunnuinnsinnsnnnntcunsnncennn
`
`-77% vs PBS Contra!
`
`
`
`
`
`LiverApoB:GAPDmRNARatio
`
`PBS
`
`~47% vs PBS Conirol
`
`2:30 SNALP 5 x 4 mg/kg
`
`4:57 SNALP 5x 0.1 mg/kg
`
`FIG. 17
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 26 of 107
`Page 26 of 107
`-9 Filed 09/06/22
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`U.S. Patent
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`US 9,518,272 B2
`
`
`
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 27 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 27 of 107
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 22 of 24
`
`US 9,518,272 B2
`
`
`PLK-7silencing
`
`
`
`
`inHep3elivertumor
`
`
`
`
`
`ApoBsilencingin
`
`
`
`normalliver
`
`0.8
`
`©
`Oo
`
`=
`oO
`
`CQao
`
`0.0+
`
`PBS
`1:57SNALP7:54SNALP
`
`
`PBS
`
`1:57SNALP7:54SNALP
`
`OHEd QdVO : LW 1d
`
`FIG.19
`
`OEJ GdY¥D : gody
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 28 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 28 of 107
`
`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 23 of 24
`
`US 9,518,272 B2
`
`Anti-tumorefficacy of SNALP in subcutaneous Hep3B tumor-bearing
`mice after 6 x 3 mg/kg dosesintravenously adminstered twice weekly
`for 3 weeks
`
`1800 -
`
`
`1600 +
`
`-@-PBS
`
`1400 -
`
`—#-— 1:57 DLINDMA (PEG2000-C-DMA)
`
`~~ 7:54 DLINDMA (PEG750-C-DMA)
`
`
`
`Tumorvolume
`
`1200 -
`
`1000 -
`
`800 -
`
`600 -
`
`400
`
`
`200
`
`
`
`16
`
`18
`
`20
`
`22
`
`24
`
`26
`
`28
`
`30
`
`32
`
`34
`
`36
`
`38 40 42
`
`44 46 48
`
`50
`
`Study day
`
`FIG. 20
`
`
`
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 29 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 29 of 107
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`U.S. Patent
`
`Dec. 13, 2016
`
`Sheet 24 of 24
`
`US 9,518,272 B2
`
`signue(4)puoGexayasiaut
`
`
`
`
`
`
`SSEudtyN}pisesiayony
`
`
`JOLBISSJOUS prdsyayuoHeD
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`
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`saydiydurgpidry
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`
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`srmauejucls
`
`BPRILEofFEPIOYOD
`
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`WN408RRQEERSjosmaseauey
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`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 30 of 107
`Case 1:22-cv-02229-MKV Document 42-9 Filed 09/06/22 Page 30 of 107
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`US 9,518,272 B2
`
`1
`NON-LIPOSOMAL SYSTEMS FOR NUCLEIC
`ACID DELIVERY
`
`CROSS-REFERENCE TO RELATED
`APPLICATION
`
`This application is a continuation of U.S. application Ser.
`No. 14/642,452, filed Mar. 9, 2015, which is a continuation
`of U.S. application Ser. No. 13/807,288,filed Apr. 18, 2013,
`and which issued on Apr. 14, 2015, as U.S. Pat. No.
`9,006,417 B2, which application is a National Phase appli-
`cation under 35 U.S.C. §371 of PCT/CA2011/000778, filed
`Jun. 30, 2011, which application claims the benefit of U.S.
`Provisional Application No. 61/360,480,filed Jun. 30, 2010,
`the disclosures of which are incorporated herein by refer-
`ence for all purposes.
`
`REFERENCE TO A “SEQUENCELISTING,” A
`TABLE, OR A COMPUTER PROGRAM LISTING
`APPENDIX SUBMITTED AS AN ASCII TEXT
`FILE
`
`The Sequence Listing written in file -100-1.TXT, created
`on May 15, 2013, 4,096 bytes, machine format IBM-PC,
`MS-Windowsoperating system, is hereby incorporated by
`reference in its entirety for all purposes.
`
`BACKGROUND OF THE INVENTION
`
`RNAinterference (RNAi) is an evolutionarily conserved
`process in which recognition of double-stranded RNA
`(dsRNA) ultimately leads to posttranscriptional suppression
`of gene expression. This suppression is mediated by short
`dsRNA,also called small interfering RNA (siRNA), which
`induces specific degradation of mRNA through complemen-
`tary base pairing. In several model systems, this natural
`response has been developed into a powerful tool for the
`investigation of gene function (see, e.g., Elbashir et al.,
`Genes Dev., 15:188-200 (2001); Hammondetal., Nat. Rev.
`Genet., 2:110-119 (2001)). More recently, it was discovered
`that introducing synthetic 21-nucleotide dsRNA duplexes
`into mammalian cells could efficiently silence gene expres-
`sion.
`
`Although the precise mechanism is still unclear, RNAi
`provides a potential new approach to downregulate or
`silence the transcription and translation of a geneofinterest.
`For example, it is desirable to modulate (e.g., reduce) the
`expression of certain genes for the treatment of neoplastic
`disorders such as cancer. It is also desirable to silence the
`
`expression of genes associated with liver diseases and
`disorders such as hepatitis. It is further desirable to reduce
`the expression of certain genes for the treatment of athero-
`sclerosis and its manifestations, e.g., hypercholesterolemia,
`myocardial infarction, and thrombosis.
`A safe and effective nucleic acid delivery system is
`required for RNAito be therapeutically useful. Viral vectors
`are relatively efficient gene delivery systems, but suffer from
`a variety of limitations, such as the potential for reversion to
`the wild-type as well as immune response concerns. As a
`result, nonviral gene delivery systems are receiving increas-
`ing attention (Worgall et al., Human Gene Therapy, 8:37
`(1997); Peeters et al., Human Gene Therapy, 7:1693 (1996);
`Yeiet al., Gene Therapy, 1:192 (1994); Hopeet al., Molecu-
`lar Membrane Biology, 15:1 (1998)). Furthermore, viral
`systems are rapidly cleared from the circulation, limiting
`transfection to “first-pass” organs such as the lungs, liver,
`
`10
`
`15
`
`20
`
`25
`
`30
`
`35
`
`40
`
`45
`
`50
`
`55
`
`60
`
`65
`
`2
`these systems induce immune
`In addition,
`and spleen.
`responses that compromise delivery with subsequent injec-
`tions.
`
`Plasmid DNA-cationic liposome complexesare currently
`the most commonly employed nonviral gene delivery
`vehicles (Felgner, Scientific American, 276:102 (1997);
`Chonn et al., Current O